Atom Nomenclature for 0UO

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0UO

Atom Name (V3) Atom Name (V2)
O3 O3
C11 C11
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C C
CA CA
C9 C9
C10 C10
N N
O O
N6 N6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
HA H28
H29 H29
H30 H30
H H35
H41 H41
OXT OXT
HXT HXT
H2 H2