Atom Nomenclature for 0UA

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0UA

Atom Name (V3) Atom Name (V2)
O1 O1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
CL8 CL8
C7 C7
CL9 CL9
C10 C10
O11 O11
N14 N14
N13 N13
C12 C12
C15 C15
C16 C16
C17 C17
C18 C18
C20 C20
C19 C19
S21 S21
O23 O23
O22 O22
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
F1 N1