Atom Nomenclature for 0U5

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0U5

Atom Name (V3) Atom Name (V2)
N01 N01
C02 C02
C03 C03
C04 C04
C05 C05
C06 C06
C07 C07
O08 O08
C09 C09
C10 C10
O11 O11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
N17 N17
N18 N18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
O30 O30
C31 C31
C32 C32
N33 N33
C34 C34
N35 N35
N36 N36
C37 C37
C38 C38
C39 C39
C40 C40
HN01 HN01
HN0A HN0A
H04 H04
H04A H04A
H06 H06
H09 H09
H09A H09A
H09B H09B
H12 H12
H12A H12A
H12B H12B
H14 H14
H15 H15
H20 H20
H23 H23
H23A H23A
H22 H22
H26 H26
H27 H27
H28 H28
H29 H29
H31 H31
HN35 HN35
HN3A HN3A
H37 H37
H37A H37A
H37B H37B
H38 H38
H38A H38A
H39 H39
H36 H36
H40 H40
H40A H40A
H391 H391
H21 H21
H19 H19