PDB Chemical Component 0U1

Ideal Model

Chemical Description

Name 2'-METHYLSELENYL-2'-DEOXY-L-URIDINE-5'-MONOPHOSPHATE
Formula C10 H15 N2 O8 P Se
Formal charge 0
Molecular weight 401.168 g/mol
Component type L-RNA LINKING

Chemical features

Atom count 37
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms HO3' OP3 HOP3
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-(2-Se-methyl-5-O-phosphono-2-seleno-beta-L-ribofuranosyl)pyrimidine-2,4(1H,3H)-dione
Systematic name (OpenEye OEToolkits) [(2S,3S,4S,5S)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-methylselanyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[Se][C@H]1[C@@H](O)[C@H](CO[P](O)(O)=O)O[C@@H]1N2C=CC(=O)NC2=O
SMILES (CACTVS) C[Se][CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C[Se][C@H]1[C@H]([C@@H](O[C@@H]1N2C=CC(=O)NC2=O)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H15N2O8PSe/c1-22-8-7(14)5(4-19-21(16,17)18)20-9(8)12-3-2-6(13)11-10(12)15/h2-3,5,7-9,14H,4H2,1H3,(H,11,13,15)(H2,16,17,18)/t5-,7-,8-,9-/m0/s1
InChIKey descriptor PADIGPKUSVFCBC-ZITKLIBNSA-N

Status Information

Last modified 2015-04-24
Created 2014-10-23
Release status REL
Model PDB code 4R8I
Processing site RCSB