PDB Chemical Component 0U1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0U1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CSE |
SE |
1.974 |
1.960 |
| O4' |
C4' |
1.457 |
1.438 |
| O4' |
C1' |
1.482 |
1.444 |
| C4' |
C5' |
1.539 |
1.530 |
| C4' |
C3' |
1.531 |
1.540 |
| SE |
C2' |
1.993 |
1.960 |
| C5' |
O5' |
1.441 |
1.429 |
| C1' |
C2' |
1.535 |
1.550 |
| C1' |
N1 |
1.497 |
1.465 |
| O3' |
C3' |
1.458 |
1.429 |
| C2' |
C3' |
1.550 |
1.548 |
| O2 |
C2 |
1.233 |
1.215 |
| OP2 |
P |
1.469 |
1.611 |
| O5' |
P |
1.623 |
1.610 |
| N1 |
C2 |
1.359 |
1.345 |
| N1 |
C6 |
1.419 |
1.368 |
| P |
OP1 |
1.470 |
1.480 |
| C2 |
N3 |
1.414 |
1.346 |
| C6 |
C5 |
1.398 |
1.351 |
| N3 |
C4 |
1.415 |
1.348 |
| C5 |
C4 |
1.399 |
1.416 |
| C4 |
O4 |
1.233 |
1.218 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'' |
1.100 |
1.090 |
| C4' |
H4' |
1.100 |
1.090 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| C2' |
H2' |
1.100 |
1.091 |
| C1' |
H1' |
1.100 |
1.090 |
| N3 |
H3 |
1.000 |
0.970 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.080 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| CSE |
HC1 |
1.100 |
1.090 |
| CSE |
HC2 |
1.100 |
1.090 |
| CSE |
HC3 |
1.100 |
1.090 |
| P |
OP3 |
|
1.610 |
| OP3 |
HOP3 |
|
0.967 |
Bond Angles for 0U1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4' |
C4' |
C3' |
105.1 |
107.3 |
| O4' |
C4' |
H4' |
112.1 |
110.0 |
| O4' |
C1' |
C2' |
106.6 |
103.5 |
| O4' |
C1' |
N1 |
116.7 |
110.6 |
| O4' |
C1' |
H1' |
107.7 |
110.6 |
| C4' |
C5' |
H5' |
109.5 |
109.5 |
| C4' |
C5' |
H5'' |
109.6 |
109.4 |
| C3' |
C4' |
H4' |
111.0 |
109.8 |
| C4' |
C3' |
H3' |
109.1 |
110.5 |
| SE |
C2' |
H2' |
106.2 |
110.8 |
| C1' |
C2' |
H2' |
111.2 |
110.9 |
| C1' |
N1 |
C2 |
120.0 |
119.6 |
| C1' |
N1 |
C6 |
120.3 |
119.7 |
| N1 |
C1' |
H1' |
107.5 |
110.7 |
| O3' |
C3' |
H3' |
110.1 |
110.4 |
| C2' |
C3' |
H3' |
108.8 |
110.5 |
| O2 |
C2 |
N3 |
119.1 |
119.5 |
| OP2 |
P |
OP3 |
|
109.5 |
| O5' |
P |
OP1 |
108.6 |
109.5 |
| O5' |
P |
OP3 |
|
109.5 |
| C2 |
N1 |
C6 |
119.6 |
120.7 |
| N1 |
C2 |
N3 |
120.0 |
120.9 |
| N1 |
C6 |
C5 |
121.5 |
119.7 |
| N1 |
C6 |
H6 |
119.2 |
120.2 |
| OP1 |
P |
OP3 |
|
109.4 |
| C2 |
N3 |
C4 |
120.5 |
120.3 |
| C2 |
N3 |
H3 |
119.7 |
119.8 |
| C6 |
C5 |
H5 |
120.7 |
120.5 |
| N3 |
C4 |
O4 |
120.6 |
120.3 |
| C4 |
N3 |
H3 |
119.7 |
119.9 |
| H5' |
C5' |
H5'' |
109.5 |
109.4 |
| HC1 |
CSE |
HC2 |
109.4 |
109.5 |
| HC1 |
CSE |
HC3 |
109.5 |
109.5 |
| HC2 |
CSE |
HC3 |
109.5 |
109.5 |
| P |
OP3 |
HOP3 |
|
114.0 |
Torsion Angles for 0U1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CSE |
SE |
C2' |
H2' |
148.9 |
297.8 |
| O4' |
C4' |
C5' |
H5' |
173.2 |
172.8 |
| O4' |
C4' |
C5' |
H5'' |
293.3 |
52.9 |
| C3' |
C4' |
O4' |
H4' |
239.4 |
240.6 |
| O4' |
C4' |
C3' |
H3' |
274.6 |
243.4 |
| C1' |
O4' |
C4' |
C3' |
341.7 |
333.5 |
| C1' |
O4' |
C4' |
H4' |
102.3 |
92.9 |
| O4' |
C1' |
C2' |
H2' |
139.6 |
81.2 |
| O4' |
C1' |
N1 |
C2 |
148.3 |
1.5 |
| O4' |
C1' |
N1 |
C6 |
328.2 |
181.2 |
| N1 |
C1' |
O4' |
H1' |
239.0 |
237.0 |
| H5' |
C5' |
C4' |
H5'' |
239.9 |
120.0 |
| O4' |
C4' |
C3' |
H4' |
121.4 |
119.5 |
| C3' |
C4' |
C5' |
H5' |
59.2 |
55.0 |
| C3' |
C4' |
C5' |
H5'' |
179.3 |
295.0 |
| O3' |
C3' |
C4' |
H3' |
237.7 |
237.5 |
| C2' |
C3' |
C4' |
H3' |
116.1 |
118.6 |
| C1' |
C2' |
SE |
H2' |
240.7 |
236.4 |
| SE |
C2' |
C3' |
H3' |
203.6 |
257.8 |
| C5' |
O5' |
P |
OP1 |
197.9 |
55.0 |
| C5' |
O5' |
P |
OP3 |
|
295.0 |
| O4' |
C1' |
C2' |
N1 |
127.9 |
118.5 |
| O4' |
C1' |
C2' |
H1' |
244.9 |
241.5 |
| SE |
C2' |
C1' |
H2' |
116.1 |
123.6 |
| C1' |
C2' |
C3' |
H3' |
85.1 |
139.5 |
| O4' |
C1' |
N1 |
C2' |
237.8 |
245.9 |
| O4' |
C1' |
N1 |
H1' |
121.1 |
123.0 |
| N1 |
C1' |
C2' |
H2' |
11.6 |
322.7 |
| C2 |
N1 |
C1' |
C6 |
180.0 |
180.3 |
| C1' |
N1 |
C2 |
N3 |
179.6 |
180.0 |
| C1' |
N1 |
C6 |
C5 |
180.2 |
179.8 |
| C1' |
N1 |
C6 |
H6 |
0.2 |
360.0 |
| O3' |
C3' |
C4' |
H4' |
31.0 |
1.3 |
| C4' |
C3' |
O3' |
H3' |
121.7 |
122.6 |
| C2' |
C3' |
O3' |
H3' |
238.6 |
237.4 |
| O4' |
C1' |
C2' |
C3' |
20.5 |
323.0 |
| C2' |
C3' |
C4' |
H4' |
269.3 |
242.5 |
| C4' |
C3' |
C2' |
H3' |
243.7 |
241.4 |
| O3' |
C3' |
C2' |
H3' |
122.1 |
122.6 |
| O2 |
C2 |
N1 |
C6 |
179.7 |
180.3 |
| N1 |
C2 |
O2 |
N3 |
179.9 |
180.0 |
| O2 |
C2 |
N3 |
C4 |
180.6 |
180.0 |
| O2 |
C2 |
N3 |
H3 |
0.5 |
360.0 |
| O5' |
P |
OP2 |
OP3 |
|
120.0 |
| OP1 |
P |
OP2 |
OP3 |
|
240.0 |
| OP2 |
P |
OP3 |
HOP3 |
|
60.0 |
| OP2 |
P |
O5' |
OP3 |
|
240.0 |
| OP1 |
P |
O5' |
OP3 |
|
120.0 |
| O5' |
P |
OP3 |
HOP3 |
|
300.0 |
| C1' |
N1 |
C2 |
C6 |
180.0 |
179.7 |
| C2 |
N1 |
C1' |
H1' |
27.1 |
238.5 |
| O2 |
C2 |
N1 |
N3 |
180.1 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
0.2 |
359.5 |
| C2 |
N1 |
C6 |
H6 |
180.2 |
179.7 |
| N1 |
C2 |
N3 |
C4 |
0.6 |
359.9 |
| N1 |
C2 |
N3 |
H3 |
180.6 |
179.9 |
| C1' |
N1 |
C6 |
C2 |
180.0 |
180.3 |
| C6 |
N1 |
C1' |
H1' |
207.1 |
58.2 |
| C6 |
N1 |
C2 |
N3 |
359.6 |
0.3 |
| N1 |
C6 |
C5 |
H5 |
179.8 |
180.3 |
| OP2 |
P |
OP1 |
OP3 |
|
120.0 |
| O5' |
P |
OP1 |
OP3 |
|
240.0 |
| OP1 |
P |
OP3 |
HOP3 |
|
179.9 |
| N3 |
C2 |
N1 |
C6 |
359.6 |
0.3 |
| C2 |
N3 |
C4 |
O4 |
179.9 |
180.0 |
| C4 |
N3 |
C2 |
H3 |
180.0 |
180.0 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.2 |
| C2 |
N3 |
C4 |
H3 |
180.0 |
180.0 |
| N1 |
C6 |
C5 |
C4 |
359.8 |
0.5 |
| C5 |
C4 |
N3 |
H3 |
179.4 |
180.0 |
| O4 |
C4 |
N3 |
H3 |
359.9 |
0.0 |
| C4' |
C5' |
H5' |
H5'' |
120.2 |
240.1 |
| C4' |
C5' |
H5'' |
H5' |
239.9 |
120.0 |
| O4' |
C4' |
H4' |
C3' |
242.8 |
242.1 |
| H4' |
C4' |
C5' |
H5' |
296.0 |
294.0 |
| H4' |
C4' |
C5' |
H5'' |
56.1 |
174.0 |
| H4' |
C4' |
C3' |
H3' |
153.2 |
123.8 |
| H3' |
C3' |
C4' |
H4' |
153.2 |
123.8 |
| HO3' |
O3' |
C3' |
H3' |
58.3 |
298.9 |
| H2' |
C2' |
C3' |
H3' |
325.9 |
21.4 |
| O4' |
C1' |
H1' |
C2' |
114.3 |
114.1 |
| O4' |
C1' |
H1' |
N1 |
233.4 |
237.0 |
| H1' |
C1' |
C2' |
H2' |
254.7 |
199.7 |
| H1' |
C1' |
N1 |
C2 |
27.1 |
238.5 |
| H1' |
C1' |
N1 |
C6 |
207.1 |
58.2 |
| C2 |
N3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
N3 |
C4 |
O4 |
359.9 |
0.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
179.8 |
| H6 |
C6 |
C5 |
H5 |
359.8 |
0.1 |
| HOP2 |
OP2 |
P |
OP3 |
|
59.9 |
| HC2 |
CSE |
HC1 |
HC3 |
120.0 |
120.0 |
| HC1 |
CSE |
HC2 |
HC3 |
240.0 |
240.0 |
| HC1 |
CSE |
HC3 |
HC2 |
120.0 |
120.0 |
| O5' |
P |
OP3 |
OP1 |
|
120.0 |