PDB Chemical Component 0U
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0U
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP3 |
P |
1.607 |
1.611 |
| OP3 |
HOP3 |
0.950 |
0.967 |
| P |
OP1 |
1.492 |
1.480 |
| P |
OP2 |
1.489 |
1.609 |
| P |
O5' |
1.550 |
1.610 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| O5' |
C5' |
1.409 |
1.429 |
| C5' |
C4' |
1.502 |
1.530 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'' |
1.100 |
1.090 |
| C4' |
O4' |
1.455 |
1.444 |
| C4' |
C3' |
1.535 |
1.545 |
| C4' |
H4' |
1.100 |
1.090 |
| O4' |
C1' |
1.429 |
1.444 |
| C3' |
O3' |
1.438 |
1.429 |
| C3' |
C2' |
1.517 |
1.545 |
| C3' |
H3' |
1.100 |
1.089 |
| O3' |
HO3' |
0.950 |
0.967 |
| C2' |
O2' |
1.404 |
1.429 |
| C2' |
C1' |
1.538 |
1.545 |
| C2' |
H2' |
1.100 |
1.090 |
| O2' |
HO2' |
0.950 |
0.967 |
| C1' |
N1 |
1.513 |
1.464 |
| C1' |
H1' |
1.100 |
1.090 |
| N1 |
C2 |
1.383 |
1.346 |
| N1 |
C6 |
1.383 |
1.368 |
| C2 |
O2 |
1.219 |
1.215 |
| C2 |
N3 |
1.381 |
1.346 |
| N3 |
C4 |
1.383 |
1.349 |
| N3 |
H3 |
1.000 |
0.970 |
| C4 |
O4 |
1.235 |
1.217 |
| C4 |
C5 |
1.437 |
1.416 |
| C5 |
C6 |
1.336 |
1.351 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.079 |
Bond Angles for 0U
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| P |
OP3 |
HOP3 |
109.5 |
114.0 |
| OP3 |
P |
OP1 |
107.5 |
109.4 |
| OP3 |
P |
OP2 |
106.0 |
109.5 |
| OP3 |
P |
O5' |
103.7 |
109.5 |
| OP1 |
P |
OP2 |
121.9 |
109.5 |
| OP1 |
P |
O5' |
106.4 |
109.5 |
| OP2 |
P |
O5' |
109.8 |
109.5 |
| P |
OP2 |
HOP2 |
109.5 |
114.0 |
| P |
O5' |
C5' |
119.0 |
123.0 |
| O5' |
C5' |
C4' |
108.3 |
109.5 |
| O5' |
C5' |
H5' |
109.9 |
109.5 |
| O5' |
C5' |
H5'' |
109.9 |
109.5 |
| C4' |
C5' |
H5' |
109.8 |
109.5 |
| C4' |
C5' |
H5'' |
109.9 |
109.4 |
| C5' |
C4' |
O4' |
111.3 |
110.4 |
| C5' |
C4' |
C3' |
114.8 |
110.4 |
| C5' |
C4' |
H4' |
103.0 |
110.3 |
| H5' |
C5' |
H5'' |
109.1 |
109.4 |
| O4' |
C4' |
C3' |
104.7 |
104.8 |
| O4' |
C4' |
H4' |
113.4 |
110.4 |
| C4' |
O4' |
C1' |
109.2 |
105.3 |
| C3' |
C4' |
H4' |
109.9 |
110.5 |
| C4' |
C3' |
O3' |
111.2 |
110.5 |
| C4' |
C3' |
C2' |
100.1 |
104.0 |
| C4' |
C3' |
H3' |
114.5 |
110.5 |
| O4' |
C1' |
C2' |
106.1 |
104.8 |
| O4' |
C1' |
N1 |
111.4 |
110.4 |
| O4' |
C1' |
H1' |
111.3 |
110.3 |
| O3' |
C3' |
C2' |
109.8 |
110.6 |
| O3' |
C3' |
H3' |
105.6 |
110.5 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| C2' |
C3' |
H3' |
115.8 |
110.7 |
| C3' |
C2' |
O2' |
110.0 |
110.5 |
| C3' |
C2' |
C1' |
102.4 |
104.1 |
| C3' |
C2' |
H2' |
114.5 |
110.5 |
| O2' |
C2' |
C1' |
111.7 |
110.5 |
| O2' |
C2' |
H2' |
105.6 |
110.4 |
| C2' |
O2' |
HO2' |
109.5 |
114.1 |
| C1' |
C2' |
H2' |
112.8 |
110.6 |
| C2' |
C1' |
N1 |
111.8 |
110.4 |
| C2' |
C1' |
H1' |
110.8 |
110.4 |
| N1 |
C1' |
H1' |
105.5 |
110.4 |
| C1' |
N1 |
C2 |
120.4 |
119.7 |
| C1' |
N1 |
C6 |
119.3 |
119.7 |
| C2 |
N1 |
C6 |
120.3 |
120.6 |
| N1 |
C2 |
O2 |
122.8 |
119.5 |
| N1 |
C2 |
N3 |
114.9 |
121.0 |
| N1 |
C6 |
C5 |
124.1 |
119.7 |
| N1 |
C6 |
H6 |
117.9 |
120.2 |
| O2 |
C2 |
N3 |
122.3 |
119.5 |
| C2 |
N3 |
C4 |
127.1 |
120.3 |
| C2 |
N3 |
H3 |
116.4 |
119.9 |
| C4 |
N3 |
H3 |
116.5 |
119.8 |
| N3 |
C4 |
O4 |
121.3 |
120.3 |
| N3 |
C4 |
C5 |
115.0 |
119.4 |
| O4 |
C4 |
C5 |
123.7 |
120.3 |
| C4 |
C5 |
C6 |
118.6 |
119.1 |
| C4 |
C5 |
H5 |
120.7 |
120.5 |
| C6 |
C5 |
H5 |
120.7 |
120.4 |
| C5 |
C6 |
H6 |
118.0 |
120.2 |
Torsion Angles for 0U
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP3 |
OP2 |
228.1 |
240.0 |
| OP1 |
P |
OP3 |
O5' |
112.5 |
120.0 |
| OP2 |
P |
OP3 |
O5' |
244.4 |
240.0 |
| OP3 |
P |
OP2 |
HOP2 |
236.8 |
300.0 |
| OP3 |
P |
O5' |
C5' |
70.4 |
65.0 |
| HOP3 |
OP3 |
P |
OP1 |
0.0 |
180.0 |
| HOP3 |
OP3 |
P |
OP2 |
131.9 |
300.0 |
| HOP3 |
OP3 |
P |
O5' |
247.5 |
60.0 |
| OP1 |
P |
OP3 |
HOP3 |
0.0 |
180.0 |
| OP3 |
P |
OP1 |
OP2 |
122.5 |
120.0 |
| OP3 |
P |
OP1 |
O5' |
249.3 |
240.0 |
| OP2 |
P |
OP1 |
O5' |
126.8 |
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
0.0 |
60.0 |
| OP1 |
P |
O5' |
C5' |
317.1 |
305.0 |
| OP2 |
P |
OP3 |
HOP3 |
131.9 |
300.0 |
| OP3 |
P |
OP2 |
OP1 |
236.8 |
240.0 |
| OP3 |
P |
OP2 |
O5' |
111.4 |
120.0 |
| OP1 |
P |
OP2 |
O5' |
234.7 |
240.0 |
| OP2 |
P |
O5' |
C5' |
183.3 |
185.0 |
| O5' |
P |
OP3 |
HOP3 |
247.5 |
60.0 |
| OP3 |
P |
O5' |
OP1 |
113.3 |
120.0 |
| OP3 |
P |
O5' |
OP2 |
247.0 |
240.0 |
| OP1 |
P |
O5' |
OP2 |
133.8 |
120.0 |
| O5' |
P |
OP2 |
HOP2 |
125.4 |
180.0 |
| P |
O5' |
C5' |
C4' |
185.5 |
180.0 |
| P |
O5' |
C5' |
H5' |
305.5 |
300.0 |
| P |
O5' |
C5' |
H5'' |
65.5 |
60.0 |
| HOP2 |
OP2 |
P |
O5' |
125.4 |
180.0 |
| C4' |
C5' |
O5' |
H5' |
240.0 |
240.0 |
| C4' |
C5' |
O5' |
H5'' |
120.0 |
120.0 |
| O5' |
C5' |
C4' |
O4' |
62.6 |
293.6 |
| O5' |
C5' |
C4' |
C3' |
303.9 |
178.2 |
| O5' |
C5' |
C4' |
H4' |
184.5 |
55.8 |
| H5' |
C5' |
O5' |
H5'' |
240.0 |
240.0 |
| O5' |
C5' |
C4' |
H5' |
120.0 |
120.0 |
| O5' |
C5' |
C4' |
H5'' |
240.0 |
240.0 |
| H5' |
C5' |
C4' |
H5'' |
120.0 |
119.9 |
| O4' |
C4' |
C5' |
C3' |
118.7 |
115.4 |
| O4' |
C4' |
C5' |
H4' |
238.1 |
237.8 |
| C5' |
C4' |
O4' |
C1' |
213.5 |
200.6 |
| C3' |
C4' |
C5' |
H4' |
119.4 |
122.4 |
| C5' |
C4' |
C3' |
O3' |
276.9 |
261.5 |
| C5' |
C4' |
C3' |
C2' |
160.9 |
142.8 |
| C5' |
C4' |
C3' |
H3' |
36.4 |
24.0 |
| O5' |
C5' |
H5' |
C4' |
240.9 |
240.0 |
| O5' |
C5' |
H5' |
H5'' |
120.5 |
120.0 |
| C4' |
C5' |
H5' |
H5'' |
239.5 |
240.1 |
| H5' |
C5' |
C4' |
O4' |
302.6 |
173.5 |
| H5' |
C5' |
C4' |
C3' |
183.9 |
58.1 |
| H5' |
C5' |
C4' |
H4' |
64.5 |
295.8 |
| O5' |
C5' |
H5'' |
C4' |
119.1 |
120.0 |
| O5' |
C5' |
H5'' |
H5' |
239.5 |
240.0 |
| C4' |
C5' |
H5'' |
H5' |
120.4 |
120.0 |
| H5'' |
C5' |
C4' |
O4' |
182.6 |
53.6 |
| H5'' |
C5' |
C4' |
C3' |
63.9 |
298.2 |
| H5'' |
C5' |
C4' |
H4' |
304.5 |
175.8 |
| O4' |
C4' |
C5' |
H5' |
302.6 |
173.5 |
| O4' |
C4' |
C5' |
H5'' |
182.6 |
53.6 |
| C5' |
C4' |
O4' |
C3' |
235.4 |
241.1 |
| C5' |
C4' |
O4' |
H4' |
115.6 |
122.2 |
| C3' |
C4' |
O4' |
H4' |
240.2 |
241.1 |
| O4' |
C4' |
C3' |
O3' |
154.5 |
142.6 |
| O4' |
C4' |
C3' |
C2' |
38.5 |
24.0 |
| O4' |
C4' |
C3' |
H3' |
274.0 |
265.2 |
| C4' |
O4' |
C1' |
C2' |
356.0 |
40.5 |
| C4' |
O4' |
C1' |
N1 |
118.0 |
159.3 |
| C4' |
O4' |
C1' |
H1' |
235.4 |
281.7 |
| C3' |
C4' |
C5' |
H5' |
183.9 |
58.1 |
| C3' |
C4' |
C5' |
H5'' |
63.9 |
298.2 |
| C5' |
C4' |
C3' |
O4' |
122.4 |
118.8 |
| C5' |
C4' |
C3' |
H4' |
244.5 |
237.7 |
| O4' |
C4' |
C3' |
H4' |
122.1 |
118.9 |
| C3' |
C4' |
O4' |
C1' |
338.1 |
319.5 |
| O3' |
C3' |
C4' |
C2' |
116.0 |
118.7 |
| O3' |
C3' |
C4' |
H3' |
240.5 |
237.5 |
| C4' |
C3' |
O3' |
HO3' |
180.0 |
180.0 |
| C2' |
C3' |
C4' |
H3' |
124.5 |
118.8 |
| C4' |
C3' |
C2' |
O2' |
79.0 |
118.7 |
| C4' |
C3' |
C2' |
C1' |
320.1 |
360.0 |
| C4' |
C3' |
C2' |
H2' |
197.7 |
241.2 |
| H4' |
C4' |
C5' |
H5' |
64.5 |
295.8 |
| H4' |
C4' |
C5' |
H5'' |
304.5 |
175.8 |
| C5' |
C4' |
H4' |
O4' |
239.5 |
237.8 |
| C5' |
C4' |
H4' |
C3' |
122.8 |
122.3 |
| O4' |
C4' |
H4' |
C3' |
243.2 |
244.6 |
| H4' |
C4' |
O4' |
C1' |
97.8 |
78.4 |
| H4' |
C4' |
C3' |
O3' |
32.4 |
23.8 |
| H4' |
C4' |
C3' |
C2' |
276.4 |
265.1 |
| H4' |
C4' |
C3' |
H3' |
151.9 |
146.3 |
| C1' |
O4' |
C4' |
C3' |
338.1 |
319.5 |
| C1' |
O4' |
C4' |
H4' |
97.8 |
78.4 |
| C3' |
C2' |
C1' |
O4' |
28.4 |
336.1 |
| O2' |
C2' |
C1' |
O4' |
270.7 |
217.4 |
| O4' |
C1' |
C2' |
H2' |
151.9 |
94.8 |
| C2' |
C1' |
O4' |
N1 |
238.1 |
241.1 |
| C2' |
C1' |
O4' |
H1' |
120.6 |
118.8 |
| N1 |
C1' |
O4' |
H1' |
242.6 |
237.6 |
| O4' |
C1' |
N1 |
C2 |
158.5 |
1.4 |
| O4' |
C1' |
N1 |
C6 |
336.2 |
181.2 |
| O3' |
C3' |
C4' |
H4' |
32.4 |
23.8 |
| C4' |
C3' |
O3' |
C2' |
250.2 |
245.4 |
| C4' |
C3' |
O3' |
H3' |
124.7 |
122.5 |
| C2' |
C3' |
O3' |
H3' |
234.6 |
237.1 |
| O3' |
C3' |
C2' |
O2' |
322.0 |
0.1 |
| O3' |
C3' |
C2' |
C1' |
203.1 |
241.4 |
| O3' |
C3' |
C2' |
H2' |
80.7 |
122.6 |
| C2' |
C3' |
C4' |
H4' |
276.4 |
265.1 |
| C4' |
C3' |
C2' |
O3' |
117.0 |
118.6 |
| C4' |
C3' |
C2' |
H3' |
236.4 |
241.3 |
| O4' |
C1' |
C2' |
C3' |
28.4 |
336.1 |
| O3' |
C3' |
C2' |
H3' |
119.4 |
122.7 |
| C2' |
C3' |
O3' |
HO3' |
289.9 |
294.6 |
| O2' |
C2' |
C3' |
C1' |
118.9 |
118.7 |
| O2' |
C2' |
C3' |
H2' |
241.3 |
237.5 |
| C3' |
C2' |
O2' |
HO2' |
180.0 |
61.4 |
| C1' |
C2' |
C3' |
H2' |
122.4 |
118.8 |
| C3' |
C2' |
C1' |
N1 |
266.7 |
217.2 |
| C3' |
C2' |
C1' |
H1' |
149.3 |
94.8 |
| H3' |
C3' |
C4' |
H4' |
151.9 |
146.3 |
| C4' |
C3' |
H3' |
O3' |
237.4 |
237.5 |
| C4' |
C3' |
H3' |
C2' |
115.7 |
114.7 |
| O3' |
C3' |
H3' |
C2' |
238.3 |
237.2 |
| H3' |
C3' |
O3' |
HO3' |
55.3 |
57.5 |
| H3' |
C3' |
C2' |
O2' |
202.7 |
237.4 |
| H3' |
C3' |
C2' |
C1' |
83.7 |
118.7 |
| H3' |
C3' |
C2' |
H2' |
321.3 |
359.9 |
| HO3' |
O3' |
C3' |
C2' |
289.9 |
294.6 |
| HO3' |
O3' |
C3' |
H3' |
55.3 |
57.5 |
| O4' |
C1' |
C2' |
O2' |
270.7 |
217.4 |
| O2' |
C2' |
C3' |
H3' |
202.7 |
237.4 |
| C3' |
C2' |
O2' |
C1' |
247.0 |
245.3 |
| C3' |
C2' |
O2' |
H2' |
124.0 |
122.5 |
| C1' |
C2' |
O2' |
H2' |
237.0 |
237.2 |
| O2' |
C2' |
C1' |
N1 |
149.1 |
98.5 |
| O2' |
C2' |
C1' |
H1' |
31.7 |
336.1 |
| O4' |
C1' |
C2' |
N1 |
121.6 |
118.9 |
| O4' |
C1' |
C2' |
H1' |
239.0 |
241.3 |
| C1' |
C2' |
C3' |
H3' |
83.7 |
118.7 |
| C3' |
C2' |
C1' |
O2' |
117.7 |
118.7 |
| C3' |
C2' |
C1' |
H2' |
236.4 |
241.3 |
| O2' |
C2' |
C1' |
H2' |
118.7 |
122.6 |
| C1' |
C2' |
O2' |
HO2' |
293.0 |
176.1 |
| N1 |
C1' |
C2' |
H1' |
117.4 |
122.4 |
| C2' |
C1' |
N1 |
C2 |
277.1 |
116.8 |
| C2' |
C1' |
N1 |
C6 |
94.7 |
296.6 |
| H2' |
C2' |
C3' |
H3' |
321.3 |
359.9 |
| C3' |
C2' |
H2' |
O2' |
238.8 |
237.5 |
| C3' |
C2' |
H2' |
C1' |
116.6 |
114.8 |
| O2' |
C2' |
H2' |
C1' |
237.7 |
237.3 |
| H2' |
C2' |
O2' |
HO2' |
56.0 |
298.8 |
| H2' |
C2' |
C1' |
N1 |
30.3 |
335.9 |
| H2' |
C2' |
C1' |
H1' |
272.9 |
213.5 |
| HO2' |
O2' |
C2' |
C1' |
293.0 |
176.1 |
| HO2' |
O2' |
C2' |
H2' |
56.0 |
298.8 |
| O4' |
C1' |
N1 |
C2' |
241.4 |
244.6 |
| O4' |
C1' |
N1 |
H1' |
120.9 |
122.3 |
| N1 |
C1' |
C2' |
H2' |
30.3 |
335.9 |
| C2' |
C1' |
N1 |
H1' |
239.5 |
237.7 |
| C2 |
N1 |
C1' |
C6 |
182.4 |
180.2 |
| C1' |
N1 |
C2 |
O2 |
357.8 |
0.1 |
| C1' |
N1 |
C2 |
N3 |
179.6 |
180.0 |
| C1' |
N1 |
C6 |
C5 |
181.1 |
179.7 |
| C1' |
N1 |
C6 |
H6 |
1.0 |
0.0 |
| O4' |
C1' |
H1' |
C2' |
117.8 |
115.3 |
| O4' |
C1' |
H1' |
N1 |
239.1 |
237.6 |
| H1' |
C1' |
C2' |
H2' |
272.9 |
213.5 |
| C2' |
C1' |
H1' |
N1 |
121.2 |
122.3 |
| H1' |
C1' |
N1 |
C2 |
37.6 |
239.1 |
| H1' |
C1' |
N1 |
C6 |
215.3 |
58.9 |
| C2 |
N1 |
C1' |
H1' |
37.6 |
239.1 |
| C1' |
N1 |
C2 |
C6 |
177.6 |
179.8 |
| C2 |
N1 |
C6 |
C5 |
358.7 |
359.5 |
| C2 |
N1 |
C6 |
H6 |
178.7 |
179.8 |
| O2 |
C2 |
N1 |
N3 |
178.2 |
180.1 |
| N1 |
C2 |
N3 |
C4 |
358.3 |
0.1 |
| N1 |
C2 |
N3 |
H3 |
178.3 |
180.0 |
| C6 |
N1 |
C1' |
H1' |
215.3 |
58.9 |
| C1' |
N1 |
C6 |
C2 |
182.4 |
180.2 |
| C6 |
N1 |
C2 |
O2 |
180.2 |
180.3 |
| C6 |
N1 |
C2 |
N3 |
1.9 |
0.2 |
| C4 |
C5 |
C6 |
N1 |
0.1 |
0.6 |
| N1 |
C6 |
C5 |
H5 |
180.1 |
180.3 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
179.7 |
| O2 |
C2 |
N1 |
C6 |
180.2 |
180.3 |
| N1 |
C2 |
O2 |
N3 |
181.9 |
179.9 |
| O2 |
C2 |
N3 |
C4 |
180.0 |
180.0 |
| O2 |
C2 |
N3 |
H3 |
0.0 |
359.9 |
| N3 |
C2 |
N1 |
C6 |
1.9 |
0.2 |
| N1 |
C2 |
N3 |
O2 |
178.2 |
180.1 |
| C4 |
N3 |
C2 |
H3 |
180.0 |
180.1 |
| C2 |
N3 |
C4 |
O4 |
180.6 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
0.7 |
359.9 |
| C2 |
N3 |
C4 |
H3 |
180.0 |
179.9 |
| O4 |
C4 |
N3 |
C5 |
179.9 |
180.1 |
| N3 |
C4 |
C5 |
C6 |
0.2 |
359.7 |
| N3 |
C4 |
C5 |
H5 |
180.2 |
180.0 |
| C2 |
N3 |
H3 |
C4 |
180.0 |
180.1 |
| H3 |
N3 |
C4 |
O4 |
0.6 |
0.1 |
| H3 |
N3 |
C4 |
C5 |
180.7 |
180.0 |
| O4 |
C4 |
N3 |
H3 |
0.6 |
0.1 |
| N3 |
C4 |
O4 |
C5 |
180.1 |
179.9 |
| O4 |
C4 |
C5 |
C6 |
180.3 |
179.7 |
| O4 |
C4 |
C5 |
H5 |
0.3 |
360.0 |
| N1 |
C6 |
C5 |
C4 |
0.1 |
0.6 |
| C5 |
C4 |
N3 |
H3 |
180.7 |
180.0 |
| N3 |
C4 |
C5 |
O4 |
179.9 |
180.1 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.7 |
| C4 |
C5 |
C6 |
H6 |
180.2 |
180.2 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.3 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.3 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.7 |
| H5 |
C5 |
C6 |
H6 |
0.2 |
360.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
179.7 |
| H6 |
C6 |
C5 |
H5 |
0.2 |
360.0 |