PDB Chemical Component 0TM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0TM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N4 |
C13 |
1.157 |
1.136 |
| C13 |
C12 |
1.466 |
1.432 |
| C11 |
C12 |
1.351 |
1.363 |
| C11 |
N3 |
1.341 |
1.360 |
| C12 |
C9 |
1.349 |
1.471 |
| O2 |
C17 |
1.472 |
1.429 |
| O2 |
C6 |
1.405 |
1.358 |
| C14 |
O1 |
1.481 |
1.429 |
| O1 |
C5 |
1.376 |
1.360 |
| C6 |
C5 |
1.365 |
1.394 |
| C6 |
C1 |
1.418 |
1.388 |
| C5 |
C4 |
1.440 |
1.382 |
| C1 |
C2 |
1.413 |
1.380 |
| N3 |
C10 |
1.353 |
1.371 |
| C4 |
C3 |
1.422 |
1.395 |
| C9 |
C10 |
1.420 |
1.407 |
| C9 |
C7 |
1.430 |
1.402 |
| C2 |
C3 |
1.416 |
1.397 |
| C2 |
CL |
1.722 |
1.736 |
| C3 |
C7 |
1.430 |
1.480 |
| C10 |
N2 |
1.310 |
1.330 |
| C7 |
N1 |
1.365 |
1.332 |
| N2 |
C8 |
1.383 |
1.323 |
| N1 |
C8 |
1.352 |
1.327 |
| C8 |
S |
1.721 |
1.762 |
| O3 |
C16 |
1.228 |
1.212 |
| C19 |
N5 |
1.466 |
1.465 |
| C16 |
N5 |
1.358 |
1.347 |
| C16 |
C15 |
1.537 |
1.507 |
| N5 |
C18 |
1.479 |
1.465 |
| S |
C15 |
1.826 |
1.810 |
| C14 |
H1 |
1.100 |
1.090 |
| C14 |
H2 |
1.101 |
1.090 |
| C14 |
H3 |
1.100 |
1.089 |
| C4 |
H4 |
1.080 |
1.080 |
| C17 |
H5 |
1.100 |
1.090 |
| C17 |
H6 |
1.100 |
1.090 |
| C17 |
H7 |
1.100 |
1.090 |
| C1 |
H8 |
1.080 |
1.080 |
| C11 |
H9 |
1.080 |
1.081 |
| N3 |
H10 |
1.000 |
0.971 |
| C15 |
H11 |
1.100 |
1.091 |
| C15 |
H12 |
1.100 |
1.089 |
| C18 |
H13 |
1.100 |
1.090 |
| C18 |
H14 |
1.100 |
1.090 |
| C18 |
H15 |
1.100 |
1.090 |
| C19 |
H16 |
1.100 |
1.089 |
| C19 |
H17 |
1.100 |
1.090 |
| C19 |
H18 |
1.100 |
1.090 |
Bond Angles for 0TM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
N3 |
C10 |
103.2 |
110.5 |
| N3 |
C11 |
H9 |
123.4 |
125.2 |
| C11 |
N3 |
H10 |
128.4 |
124.8 |
| C12 |
C9 |
C10 |
104.1 |
106.1 |
| O2 |
C17 |
H5 |
109.5 |
109.5 |
| O2 |
C17 |
H6 |
109.4 |
109.4 |
| O2 |
C17 |
H7 |
109.5 |
109.5 |
| O2 |
C6 |
C1 |
123.9 |
119.9 |
| C14 |
O1 |
C5 |
119.2 |
117.0 |
| O1 |
C14 |
H1 |
109.5 |
109.5 |
| O1 |
C14 |
H2 |
109.5 |
109.5 |
| O1 |
C14 |
H3 |
109.4 |
109.5 |
| O1 |
C5 |
C4 |
122.1 |
120.0 |
| C6 |
C1 |
C2 |
121.0 |
120.2 |
| C6 |
C1 |
H8 |
119.5 |
119.8 |
| C5 |
C4 |
C3 |
119.7 |
119.9 |
| C5 |
C4 |
H4 |
120.1 |
120.1 |
| C1 |
C2 |
C3 |
118.1 |
120.0 |
| C1 |
C2 |
CL |
118.6 |
120.0 |
| C2 |
C1 |
H8 |
119.5 |
120.0 |
| C9 |
C10 |
N3 |
111.5 |
107.4 |
| N3 |
C10 |
N2 |
128.7 |
134.0 |
| C10 |
N3 |
H10 |
128.4 |
124.7 |
| C4 |
C3 |
C2 |
120.3 |
119.9 |
| C4 |
C3 |
C7 |
119.2 |
120.1 |
| C3 |
C4 |
H4 |
120.2 |
120.0 |
| C9 |
C10 |
N2 |
119.6 |
118.6 |
| CL |
C2 |
C3 |
123.1 |
120.0 |
| C2 |
C3 |
C7 |
120.2 |
120.1 |
| C3 |
C7 |
N1 |
115.3 |
120.8 |
| C10 |
N2 |
C8 |
122.2 |
120.8 |
| C7 |
N1 |
C8 |
121.5 |
120.9 |
| N1 |
C8 |
N2 |
119.6 |
122.5 |
| N2 |
C8 |
S |
112.8 |
118.7 |
| N1 |
C8 |
S |
127.5 |
118.8 |
| C8 |
S |
C15 |
103.5 |
100.0 |
| O3 |
C16 |
N5 |
123.4 |
120.0 |
| C16 |
N5 |
C18 |
122.1 |
120.0 |
| C16 |
C15 |
H11 |
108.1 |
109.5 |
| C16 |
C15 |
H12 |
108.1 |
109.5 |
| N5 |
C18 |
H13 |
109.5 |
109.4 |
| N5 |
C18 |
H14 |
109.5 |
109.5 |
| N5 |
C18 |
H15 |
109.4 |
109.5 |
| S |
C15 |
H11 |
108.1 |
109.4 |
| S |
C15 |
H12 |
108.2 |
109.5 |
| H1 |
C14 |
H2 |
109.5 |
109.4 |
| H1 |
C14 |
H3 |
109.5 |
109.5 |
| H2 |
C14 |
H3 |
109.5 |
109.4 |
| H5 |
C17 |
H6 |
109.5 |
109.5 |
| H5 |
C17 |
H7 |
109.5 |
109.5 |
| H6 |
C17 |
H7 |
109.5 |
109.5 |
| H11 |
C15 |
H12 |
109.5 |
109.5 |
| H13 |
C18 |
H14 |
109.4 |
109.5 |
| H13 |
C18 |
H15 |
109.5 |
109.5 |
| H14 |
C18 |
H15 |
109.5 |
109.5 |
| H16 |
C19 |
H17 |
109.5 |
109.5 |
| H16 |
C19 |
H18 |
109.5 |
109.5 |
| H17 |
C19 |
H18 |
109.5 |
109.4 |
Torsion Angles for 0TM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
C12 |
C9 |
C10 |
180.1 |
180.0 |
| C11 |
C12 |
C9 |
C10 |
3.0 |
360.0 |
| C9 |
C10 |
N3 |
C11 |
359.4 |
360.0 |
| C11 |
N3 |
C10 |
N2 |
183.5 |
180.0 |
| C10 |
N3 |
C11 |
H10 |
180.0 |
180.1 |
| C12 |
C9 |
C10 |
N3 |
358.5 |
0.0 |
| C12 |
C9 |
C10 |
N2 |
174.8 |
180.0 |
| C17 |
O2 |
C6 |
C1 |
25.3 |
0.0 |
| H5 |
C17 |
O2 |
H6 |
240.0 |
240.0 |
| H5 |
C17 |
O2 |
H7 |
120.0 |
120.0 |
| H6 |
C17 |
O2 |
H7 |
240.0 |
240.0 |
| O2 |
C6 |
C1 |
C2 |
182.7 |
180.0 |
| O2 |
C6 |
C1 |
H8 |
2.7 |
359.9 |
| C14 |
O1 |
C5 |
C4 |
14.9 |
0.0 |
| H1 |
C14 |
O1 |
H2 |
240.0 |
240.1 |
| H1 |
C14 |
O1 |
H3 |
120.0 |
120.1 |
| H2 |
C14 |
O1 |
H3 |
240.0 |
240.0 |
| C5 |
O1 |
C14 |
H1 |
180.0 |
180.0 |
| C5 |
O1 |
C14 |
H2 |
300.0 |
299.9 |
| C5 |
O1 |
C14 |
H3 |
60.0 |
59.9 |
| O1 |
C5 |
C4 |
C3 |
180.6 |
179.9 |
| O1 |
C5 |
C4 |
H4 |
0.6 |
360.0 |
| C6 |
C5 |
C4 |
C3 |
6.0 |
0.2 |
| C6 |
C5 |
C4 |
H4 |
186.0 |
180.3 |
| C6 |
C1 |
C2 |
C3 |
354.1 |
0.2 |
| C6 |
C1 |
C2 |
CL |
179.5 |
180.0 |
| C2 |
C1 |
C6 |
H8 |
180.0 |
180.1 |
| C5 |
C4 |
C3 |
C2 |
354.1 |
0.0 |
| C5 |
C4 |
C3 |
C7 |
179.7 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
179.9 |
| C6 |
C1 |
C2 |
H8 |
180.0 |
179.9 |
| C4 |
C3 |
C2 |
C1 |
5.8 |
359.8 |
| CL |
C2 |
C1 |
C3 |
185.4 |
179.8 |
| C1 |
C2 |
C3 |
C7 |
180.2 |
179.7 |
| C10 |
N3 |
C11 |
H9 |
182.7 |
180.0 |
| C11 |
N3 |
C10 |
H10 |
180.0 |
179.9 |
| C9 |
C10 |
N3 |
N2 |
175.8 |
179.9 |
| N3 |
C10 |
N2 |
C8 |
181.3 |
180.3 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.1 |
| C1 |
C2 |
C3 |
C4 |
5.8 |
359.8 |
| CL |
C2 |
C3 |
C4 |
180.1 |
180.0 |
| C2 |
C3 |
C4 |
C7 |
174.5 |
180.0 |
| C4 |
C3 |
C7 |
N1 |
61.6 |
124.6 |
| C11 |
N3 |
C10 |
C9 |
359.4 |
360.0 |
| N3 |
C10 |
C9 |
N2 |
183.8 |
180.1 |
| C9 |
C10 |
N3 |
H10 |
179.3 |
180.1 |
| C9 |
C10 |
N2 |
C8 |
5.8 |
0.3 |
| C9 |
C7 |
N1 |
C8 |
358.5 |
0.3 |
| C1 |
C2 |
C3 |
CL |
185.6 |
179.8 |
| C3 |
C2 |
C1 |
H8 |
174.1 |
180.3 |
| C4 |
C3 |
C2 |
C7 |
185.6 |
180.0 |
| C2 |
C3 |
C4 |
H4 |
174.1 |
180.0 |
| C2 |
C3 |
C7 |
N1 |
247.2 |
304.6 |
| C1 |
C2 |
CL |
C3 |
174.3 |
180.2 |
| CL |
C2 |
C1 |
H8 |
359.5 |
0.0 |
| C4 |
C3 |
C2 |
CL |
180.1 |
180.0 |
| CL |
C2 |
C3 |
C7 |
354.5 |
360.0 |
| C4 |
C3 |
C7 |
C2 |
174.5 |
180.0 |
| C7 |
C3 |
C4 |
H4 |
359.7 |
360.0 |
| C3 |
C7 |
N1 |
C8 |
180.3 |
180.0 |
| C9 |
C10 |
N2 |
N3 |
184.5 |
180.1 |
| N2 |
C10 |
N3 |
H10 |
3.5 |
0.1 |
| N1 |
C8 |
N2 |
C10 |
352.7 |
359.6 |
| C10 |
N2 |
C8 |
S |
177.2 |
179.7 |
| C7 |
N1 |
C8 |
N2 |
5.0 |
0.0 |
| C7 |
N1 |
C8 |
S |
179.8 |
180.0 |
| N1 |
C8 |
N2 |
S |
175.5 |
179.9 |
| N2 |
C8 |
S |
C15 |
163.9 |
360.0 |
| C10 |
N2 |
C8 |
N1 |
352.7 |
359.6 |
| N2 |
C8 |
N1 |
S |
185.2 |
180.1 |
| N1 |
C8 |
S |
C15 |
348.8 |
180.1 |
| N1 |
C8 |
S |
N2 |
184.9 |
180.1 |
| C8 |
S |
C15 |
H11 |
173.7 |
300.0 |
| C8 |
S |
C15 |
H12 |
55.2 |
60.0 |
| O3 |
C16 |
N5 |
C18 |
181.5 |
0.0 |
| O3 |
C16 |
C15 |
H11 |
108.6 |
240.0 |
| O3 |
C16 |
C15 |
H12 |
227.1 |
120.0 |
| C19 |
N5 |
C18 |
H13 |
180.0 |
270.0 |
| C19 |
N5 |
C18 |
H14 |
300.0 |
30.0 |
| C19 |
N5 |
C18 |
H15 |
60.0 |
150.0 |
| N5 |
C16 |
C15 |
H11 |
289.1 |
60.1 |
| N5 |
C16 |
C15 |
H12 |
47.5 |
300.1 |
| C16 |
N5 |
C18 |
H13 |
359.4 |
90.0 |
| C16 |
N5 |
C18 |
H14 |
119.4 |
210.0 |
| C16 |
N5 |
C18 |
H15 |
239.4 |
330.0 |
| S |
C15 |
C16 |
H11 |
239.3 |
119.9 |
| S |
C15 |
C16 |
H12 |
120.8 |
239.9 |
| H11 |
C15 |
C16 |
H12 |
241.5 |
120.0 |
| H13 |
C18 |
N5 |
H14 |
240.0 |
240.0 |
| H13 |
C18 |
N5 |
H15 |
120.0 |
120.0 |
| H14 |
C18 |
N5 |
H15 |
240.0 |
239.9 |
| C16 |
C15 |
S |
H11 |
120.7 |
240.1 |
| C16 |
C15 |
S |
H12 |
239.2 |
120.1 |
| H11 |
C15 |
S |
H12 |
118.5 |
240.0 |
| H1 |
C14 |
O1 |
C5 |
180.0 |
180.0 |
| O1 |
C14 |
H1 |
H2 |
120.0 |
120.0 |
| O1 |
C14 |
H1 |
H3 |
240.0 |
239.9 |
| H2 |
C14 |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
C14 |
O1 |
C5 |
300.0 |
299.9 |
| O1 |
C14 |
H2 |
H1 |
240.0 |
240.0 |
| O1 |
C14 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C14 |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
C14 |
O1 |
C5 |
60.0 |
59.9 |
| O1 |
C14 |
H3 |
H1 |
120.0 |
120.0 |
| O1 |
C14 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C14 |
H3 |
H2 |
120.0 |
119.9 |
| C5 |
C4 |
H4 |
C3 |
180.0 |
179.9 |
| H4 |
C4 |
C3 |
C2 |
174.1 |
180.0 |
| H4 |
C4 |
C3 |
C7 |
359.7 |
360.0 |
| O2 |
C17 |
H5 |
H6 |
120.0 |
119.9 |
| O2 |
C17 |
H5 |
H7 |
240.0 |
240.0 |
| H6 |
C17 |
H5 |
H7 |
120.0 |
120.0 |
| O2 |
C17 |
H6 |
H5 |
240.0 |
240.0 |
| O2 |
C17 |
H6 |
H7 |
120.0 |
120.0 |
| H5 |
C17 |
H6 |
H7 |
240.0 |
240.0 |
| O2 |
C17 |
H7 |
H5 |
120.1 |
120.0 |
| O2 |
C17 |
H7 |
H6 |
240.0 |
240.1 |
| H5 |
C17 |
H7 |
H6 |
120.0 |
120.0 |
| C6 |
C1 |
H8 |
C2 |
180.0 |
180.1 |
| H8 |
C1 |
C2 |
C3 |
174.1 |
180.3 |
| H8 |
C1 |
C2 |
CL |
359.5 |
0.0 |
| H9 |
C11 |
N3 |
C10 |
182.7 |
180.0 |
| H9 |
C11 |
N3 |
H10 |
2.7 |
359.9 |
| C11 |
N3 |
H10 |
C10 |
180.0 |
180.1 |
| H10 |
N3 |
C11 |
H9 |
2.7 |
359.9 |
| H10 |
N3 |
C10 |
N2 |
3.5 |
0.1 |
| C16 |
C15 |
H11 |
H12 |
117.6 |
239.9 |
| S |
C15 |
H11 |
H12 |
242.4 |
120.0 |
| C16 |
C15 |
H12 |
H11 |
242.4 |
120.0 |
| S |
C15 |
H12 |
H11 |
117.6 |
240.0 |
| N5 |
C18 |
H13 |
H14 |
120.0 |
120.0 |
| N5 |
C18 |
H13 |
H15 |
240.0 |
240.0 |
| H14 |
C18 |
H13 |
H15 |
120.0 |
120.1 |
| N5 |
C18 |
H14 |
H13 |
240.0 |
240.0 |
| N5 |
C18 |
H14 |
H15 |
120.0 |
120.0 |
| H13 |
C18 |
H14 |
H15 |
240.0 |
240.0 |
| N5 |
C18 |
H15 |
H13 |
120.0 |
120.0 |
| N5 |
C18 |
H15 |
H14 |
240.0 |
240.0 |
| H13 |
C18 |
H15 |
H14 |
120.0 |
120.0 |
| H17 |
C19 |
H16 |
H18 |
120.0 |
120.0 |
| H16 |
C19 |
H17 |
H18 |
240.0 |
240.0 |
| H16 |
C19 |
H18 |
H17 |
120.0 |
120.0 |