PDB Chemical Component 0TD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0TD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.247 |
1.209 |
| CSB |
SB |
1.783 |
1.814 |
| C |
CA |
1.557 |
1.507 |
| CA |
N |
1.435 |
1.468 |
| CA |
CB |
1.543 |
1.530 |
| SB |
CB |
1.811 |
1.814 |
| CB |
CG |
1.538 |
1.507 |
| CG |
OD1 |
1.249 |
1.208 |
| CG |
OD2 |
1.260 |
1.342 |
| N |
H |
1.000 |
1.010 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.090 |
| CB |
H6 |
1.100 |
1.090 |
| OD2 |
H7 |
0.949 |
0.968 |
| C |
OXT |
|
1.343 |
| CSB |
H3 |
1.100 |
1.091 |
| CSB |
H5 |
1.100 |
1.090 |
| CSB |
H8 |
1.100 |
1.090 |
| OXT |
HXT |
|
0.966 |
Bond Angles for 0TD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
|
120.0 |
| CSB |
SB |
CB |
90.9 |
103.0 |
| SB |
CSB |
H3 |
109.5 |
109.5 |
| SB |
CSB |
H5 |
109.4 |
109.5 |
| SB |
CSB |
H8 |
109.5 |
109.5 |
| C |
CA |
CB |
117.6 |
109.5 |
| C |
CA |
HA |
109.1 |
109.4 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| CA |
CB |
SB |
112.1 |
109.5 |
| CA |
CB |
CG |
112.9 |
109.5 |
| CB |
CA |
HA |
109.3 |
109.5 |
| CA |
CB |
H6 |
108.7 |
109.5 |
| SB |
CB |
CG |
108.3 |
109.4 |
| SB |
CB |
H6 |
105.8 |
109.5 |
| CB |
CG |
OD1 |
117.3 |
120.0 |
| CB |
CG |
OD2 |
117.1 |
120.0 |
| CG |
CB |
H6 |
108.7 |
109.5 |
| OD2 |
CG |
OD1 |
125.7 |
120.0 |
| CG |
OD2 |
H7 |
109.5 |
117.0 |
| H |
N |
H2 |
109.4 |
111.0 |
| C |
OXT |
HXT |
|
117.0 |
| H3 |
CSB |
H5 |
109.5 |
109.4 |
| H3 |
CSB |
H8 |
109.4 |
109.5 |
| H5 |
CSB |
H8 |
109.5 |
109.5 |
Torsion Angles for 0TD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
CB |
299.2 |
100.0 |
| O |
C |
CA |
HA |
64.2 |
220.0 |
| O |
C |
OXT |
HXT |
|
360.0 |
| CA |
CB |
SB |
CSB |
74.3 |
175.0 |
| CSB |
SB |
CB |
CG |
199.5 |
295.0 |
| CSB |
SB |
CB |
H6 |
316.0 |
55.0 |
| H3 |
CSB |
SB |
H5 |
240.0 |
240.1 |
| H3 |
CSB |
SB |
H8 |
120.0 |
120.1 |
| H5 |
CSB |
SB |
H8 |
240.0 |
240.0 |
| C |
CA |
N |
H |
180.0 |
60.0 |
| C |
CA |
N |
H2 |
300.0 |
184.0 |
| C |
CA |
CB |
SB |
73.4 |
185.0 |
| C |
CA |
CB |
CG |
310.8 |
65.0 |
| CB |
CA |
C |
HA |
234.9 |
240.0 |
| C |
CA |
CB |
H6 |
190.1 |
305.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CSB |
SB |
CB |
CA |
74.3 |
175.0 |
| C |
CA |
CB |
HA |
125.0 |
119.9 |
| CB |
CA |
N |
H |
55.5 |
300.0 |
| CB |
CA |
N |
H2 |
175.5 |
64.0 |
| SB |
CB |
CA |
CG |
122.6 |
120.0 |
| SB |
CB |
CA |
H6 |
243.4 |
240.0 |
| CA |
CB |
CG |
OD1 |
337.3 |
230.0 |
| CA |
CB |
CG |
OD2 |
158.9 |
50.0 |
| CG |
CB |
CA |
H6 |
120.7 |
120.0 |
| CB |
SB |
CSB |
H3 |
180.0 |
300.1 |
| CB |
SB |
CSB |
H5 |
300.0 |
60.0 |
| CB |
SB |
CSB |
H8 |
60.0 |
180.0 |
| CA |
CB |
SB |
CG |
234.8 |
240.0 |
| SB |
CB |
CA |
HA |
308.5 |
65.0 |
| CA |
CB |
SB |
H6 |
118.3 |
120.0 |
| SB |
CB |
CG |
OD1 |
212.5 |
110.0 |
| SB |
CB |
CG |
OD2 |
34.1 |
290.0 |
| CG |
CB |
SB |
H6 |
243.6 |
240.0 |
| CA |
CB |
CG |
SB |
124.8 |
120.0 |
| CG |
CB |
CA |
HA |
185.8 |
305.1 |
| CA |
CB |
CG |
H6 |
239.3 |
240.0 |
| SB |
CB |
CG |
H6 |
114.5 |
120.0 |
| OD2 |
CG |
CB |
OD1 |
181.6 |
180.0 |
| CB |
CG |
OD2 |
H7 |
178.3 |
180.0 |
| CB |
CG |
OD1 |
OD2 |
181.7 |
180.0 |
| OD1 |
CG |
CB |
H6 |
98.0 |
350.0 |
| OD1 |
CG |
OD2 |
H7 |
360.0 |
360.0 |
| CB |
CG |
OD2 |
OD1 |
178.3 |
180.0 |
| OD2 |
CG |
CB |
H6 |
279.6 |
170.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| C |
CA |
HA |
CB |
230.2 |
240.1 |
| HA |
CA |
N |
H |
298.9 |
180.0 |
| HA |
CA |
N |
H2 |
58.9 |
304.0 |
| HA |
CA |
CB |
SB |
308.5 |
65.0 |
| HA |
CA |
CB |
CG |
185.8 |
305.1 |
| HA |
CA |
CB |
H6 |
65.1 |
185.0 |
| CA |
CB |
H6 |
SB |
239.4 |
240.0 |
| CA |
CB |
H6 |
CG |
123.3 |
120.1 |
| H6 |
CB |
CA |
HA |
65.1 |
185.0 |
| SB |
CB |
H6 |
CG |
243.9 |
240.1 |
| H6 |
CB |
CG |
OD1 |
98.0 |
350.0 |
| H6 |
CB |
CG |
OD2 |
279.6 |
170.0 |
| H7 |
OD2 |
CG |
OD1 |
360.0 |
360.0 |
| OXT |
C |
CA |
CB |
|
280.0 |
| OXT |
C |
CA |
HA |
|
40.0 |
| H3 |
CSB |
SB |
CB |
180.0 |
300.1 |
| SB |
CSB |
H3 |
H5 |
120.0 |
120.0 |
| SB |
CSB |
H3 |
H8 |
240.0 |
240.0 |
| H5 |
CSB |
H3 |
H8 |
120.0 |
120.0 |
| H5 |
CSB |
SB |
CB |
300.0 |
60.0 |
| SB |
CSB |
H5 |
H3 |
240.0 |
240.0 |
| SB |
CSB |
H5 |
H8 |
120.0 |
120.0 |
| H3 |
CSB |
H5 |
H8 |
240.0 |
240.0 |
| H8 |
CSB |
SB |
CB |
60.0 |
180.0 |
| SB |
CSB |
H8 |
H3 |
120.0 |
120.0 |
| SB |
CSB |
H8 |
H5 |
240.0 |
240.0 |
| H3 |
CSB |
H8 |
H5 |
120.0 |
119.9 |