Atom Nomenclature for 0T8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0T8

Atom Name (V3) Atom Name (V2)
N1 N1
N3 N3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C10 C10
C13 C13
C15 C15
C20 C20
C21 C21
C22 C22
C24 C24
C26 C26
O25 O25
N6 N6
C9 C9
N4 N4
O1 O1
C2 C2
C1 C1
N2 N2
C12 C12
C11 C11
C3 C3
N5 N5
C14 C14
C16 C16
C19 C19
C23 C23
N7 N7
C18 C18
H6 H6
H7 H7
H7A H7A
H8 H8
H8A H8A
H10 H10
H10A H10A
H13 H13
H13A H13A
H15 H15
H15A H15A
H21 H21
H21A H21A
H22 H22
H24 H24
H24A H24A
H26 H26
H26A H26A
H9 H9
H9A H9A
HN4 HN4
HN2 HN2
H12 H12
H12A H12A
H11 H11
H11A H11A
H3 H3
HN5 HN5
H14 H14
H14A H14A
H19 H19
H23 H23
H18 H18