Atom Nomenclature for 0SN

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0SN

Atom Name (V3) Atom Name (V2)
C23 C23
C27 C27
C24 C24
C26 C26
C5 C5
C6 C6
C8 C8
C22 C22
C25 C25
C4 C4
C7 C7
C9 C9
C2 C2
C12 C12
C17 C17
C30 C30
C33 C33
C1 C1
C21 C21
C28 C28
C14 C14
C19 C19
C20 C20
C15 C15
C29 C29
N3 N3
N11 N11
N16 N16
O13 O13
O18 O18
O31 O31
O34 O34
O32 O32
O35 O35
S10 S10
H23 H23
H24 H24
H27 H27
H26 H26
H5 H5
H6 H6
H8 H8
H211 H211
H212 H212
H281 H281
H282 H282
H11 H11
H11C H11C
H12C H12C
H13C H13C
H141 H141
H142 H142
H191 H191
H192 H192
H16 H16
H29 H29
H32 H32
H35 H35
H201 H201
H202 H202
H151 H151
H152 H152