Atom Nomenclature for 0SJ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0SJ

Atom Name (V3) Atom Name (V2)
OAB OAB
CAU CAU
CAL CAL
CAF CAF
CAG CAG
CAT CAT
NAY NAY
CAP CAP
CAV CAV
CAN CAN
CAM CAM
CAW CAW
CAO CAO
NAX NAX
CAQ CAQ
OAA OAA
CAR CAR
CAH CAH
CAJ CAJ
CAS CAS
CL1 CL1
CAK CAK
CAI CAI
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H19 H19
H20 H20