PDB Chemical Component 0SE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0SE

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C3	C2	1.533	1.530
O34	C2	1.428	1.429
C2	C1	1.531	1.530
C2	C4	1.533	1.530
C4	C5	1.525	1.531
C4	C9	1.542	1.531
C5	C6	1.518	1.530
C6	N7	1.457	1.469
C9	C8	1.543	1.530
N23	C22	1.321	1.321
N23	C24	1.327	1.326
C22	C21	1.400	1.398
N27	C24	1.383	1.381
N7	C8	1.472	1.468
N7	C10	1.471	1.469
C13	C12	1.369	1.367
C13	C14	1.405	1.406
C24	N25	1.329	1.326
C12	C11	1.399	1.393
N20	C14	1.336	1.338
N20	C19	1.317	1.319
C14	C15	1.414	1.416
C21	C19	1.485	1.482
C21	C26	1.401	1.398
C19	N18	1.334	1.331
C11	C10	1.519	1.507
C11	N16	1.312	1.313
N25	C26	1.324	1.321
C15	N16	1.330	1.329
C15	C17	1.466	1.463
N18	C17	1.330	1.325
C33	N28	1.469	1.470
C33	C32	1.532	1.531
C17	N28	1.385	1.379
N28	C29	1.468	1.471
C32	O31	1.434	1.430
C29	C30	1.531	1.531
C30	O31	1.431	1.430
C1	H1	1.100	1.091
C1	H2	1.100	1.089
C1	H3	1.100	1.090
C3	H4	1.100	1.090
C3	H5	1.100	1.090
C3	H6	1.100	1.090
C4	H7	1.100	1.091
C5	H8	1.100	1.090
C5	H9	1.100	1.091
C6	H10	1.100	1.091
C6	H11	1.100	1.090
C8	H13	1.100	1.090
C8	H14	1.100	1.091
C9	H15	1.100	1.091
C9	H16	1.100	1.090
C10	H17	1.100	1.090
C10	H18	1.100	1.090
C12	H19	1.080	1.080
C13	H20	1.080	1.079
C22	H21	1.080	1.080
C26	H22	1.080	1.080
N27	H23	1.001	0.970
N27	H24	1.000	0.970
C29	H25	1.100	1.090
C29	H26	1.100	1.089
C30	H27	1.100	1.090
C30	H28	1.100	1.089
C32	H29	1.100	1.090
C32	H30	1.100	1.090
C33	H31	1.100	1.090
C33	H32	1.100	1.091
O34	H33	0.950	0.967

Bond Angles for 0SE

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	C4	109.3	109.4
C2	C1	H1	109.5	109.5
C2	C1	H2	109.5	109.5
C2	C1	H3	109.5	109.5
C2	C4	C5	108.8	109.5
C2	C4	C9	112.7	109.6
C2	C4	H7	108.5	109.5
C5	C4	C9	109.7	109.2
C4	C5	C6	104.0	109.3
C5	C4	H7	108.6	109.5
C4	C5	H8	110.8	109.5
C4	C5	H9	110.8	109.5
C4	C9	C8	112.0	109.3
C9	C4	H7	108.4	109.6
C4	C9	H15	108.8	109.4
C4	C9	H16	108.9	109.5
C5	C6	N7	104.5	109.5
C6	C5	H8	110.8	109.5
C6	C5	H9	110.8	109.5
C5	C6	H10	110.7	109.5
C5	C6	H11	110.7	109.5
C6	N7	C8	108.9	111.2
C6	N7	C10	111.6	111.0
N7	C6	H10	110.7	109.4
N7	C6	H11	110.7	109.5
C9	C8	H13	109.2	109.4
C9	C8	H14	109.3	109.4
N23	C22	H21	120.5	120.4
N23	C24	N25	121.9	121.9
C22	C21	C26	118.4	118.3
C8	N7	C10	115.3	111.0
N7	C8	H13	109.3	109.5
N7	C8	H14	109.2	109.4
N7	C10	H17	108.7	109.5
N7	C10	H18	108.7	109.5
C13	C12	H19	119.7	120.0
C13	C14	C15	118.7	118.9
C14	C13	H20	121.0	121.0
C24	N25	C26	120.9	120.9
C12	C11	N16	120.3	121.6
C14	C15	N16	120.1	120.3
C14	C15	C17	117.7	117.6
C21	C26	N25	118.9	119.0
C21	C26	H22	120.6	120.5
C11	C10	H17	108.7	109.5
C11	C10	H18	108.7	109.4
C11	N16	C15	122.3	121.1
N25	C26	H22	120.5	120.5
N16	C15	C17	122.2	122.1
C15	C17	N28	121.2	121.1
N18	C17	N28	121.3	121.1
C33	C32	H29	109.1	109.5
C33	C32	H30	109.1	109.5
C17	N28	C29	112.4	111.0
N28	C29	C30	109.5	109.2
N28	C29	H25	109.5	109.5
N28	C29	H26	109.5	109.5
C29	C30	O31	110.8	109.3
C30	C29	H25	109.5	109.5
C30	C29	H26	109.5	109.5
C29	C30	H27	109.1	109.5
C29	C30	H28	109.2	109.5
O31	C30	H27	109.1	109.5
O31	C30	H28	109.1	109.5
H1	C1	H2	109.5	109.5
H1	C1	H3	109.5	109.4
H2	C1	H3	109.5	109.5
H4	C3	H5	109.5	109.5
H4	C3	H6	109.4	109.4
H5	C3	H6	109.5	109.5
H8	C5	H9	109.5	109.5
H10	C6	H11	109.5	109.5
H13	C8	H14	109.4	109.4
H15	C9	H16	109.5	109.5
H17	C10	H18	109.5	109.5
H23	N27	H24	109.4	120.0
H25	C29	H26	109.5	109.5
H27	C30	H28	109.5	109.6
H29	C32	H30	109.4	109.5
H31	C33	H32	109.5	109.6

Torsion Angles for 0SE

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	C1	H1	180.0	300.0
C3	C2	C1	H2	300.0	60.0
C3	C2	C1	H3	60.0	180.1
C3	C2	C4	C5	45.2	304.9
C3	C2	C4	C9	167.2	64.7
C3	C2	C4	H7	287.2	184.9
O34	C2	C1	H1	60.5	180.0
O34	C2	C1	H2	180.5	300.0
O34	C2	C1	H3	300.5	60.0
O34	C2	C4	H7	46.3	304.9
H1	C1	C2	H2	240.0	240.0
H1	C1	C2	H3	120.0	119.9
H2	C1	C2	H3	240.0	240.0
C4	C2	C1	H1	299.9	59.9
C4	C2	C1	H2	59.9	180.0
C4	C2	C1	H3	180.0	300.0
C5	C4	C2	C9	238.0	240.2
C2	C4	C5	C6	186.1	177.6
C5	C4	C2	H7	118.0	120.0
C2	C4	C5	H8	305.2	297.6
C2	C4	C5	H9	66.9	57.7
C2	C4	C9	C8	189.3	182.4
C9	C4	C2	H7	239.9	239.8
C2	C4	C9	H15	309.7	302.4
C2	C4	C9	H16	69.0	62.4
C2	C4	C5	C9	123.8	120.0
C2	C4	C5	H7	242.1	240.0
C5	C4	C9	C8	310.7	302.4
C9	C4	C5	H7	118.3	120.0
C5	C4	C9	H15	71.1	62.3
C5	C4	C9	H16	190.4	182.4
C4	C5	C6	N7	285.3	300.9
C6	C5	C4	H8	240.9	240.0
C6	C5	C4	H9	119.1	119.9
C4	C5	C6	H10	44.5	60.8
C4	C5	C6	H11	166.1	180.8
H8	C5	C4	H9	238.3	239.9
C2	C4	C9	C5	238.6	240.0
C2	C4	C9	H7	120.1	120.1
C9	C4	C5	C6	62.3	57.6
C5	C4	C9	H7	241.6	240.1
C9	C4	C5	H8	181.4	177.6
C9	C4	C5	H9	303.2	297.7
C4	C9	C8	H13	166.4	299.1
C4	C9	C8	H14	286.1	179.2
H15	C9	C4	H16	240.8	240.0
C6	C5	C4	C9	62.3	57.6
C6	C5	C4	H7	304.0	297.6
C4	C5	C6	H8	119.1	120.0
C4	C5	C6	H9	240.9	240.1
C5	C6	N7	C8	74.7	61.7
C5	C6	N7	C10	203.0	185.8
N7	C6	C5	H10	240.8	240.0
N7	C6	C5	H11	119.2	120.1
H8	C5	C6	H9	121.8	120.1
H10	C6	C5	H11	238.3	240.0
N7	C6	C5	H8	166.2	180.9
N7	C6	C5	H9	44.4	60.8
C5	C6	N7	H10	119.2	120.0
C5	C6	N7	H11	240.8	239.9
C8	N7	C6	C10	231.6	235.9
C6	N7	C8	H13	180.6	58.3
C6	N7	C8	H14	60.8	178.3
C6	N7	C10	H17	170.2	290.0
C6	N7	C10	H18	289.4	50.0
H10	C6	N7	H11	121.6	120.0
C8	C9	C4	H7	69.2	62.3
C4	C9	C8	H15	120.4	119.9
C4	C9	C8	H16	239.6	240.0
C9	C8	N7	C10	174.4	174.2
N7	C8	C9	H13	239.9	120.1
N7	C8	C9	H14	120.1	240.0
H13	C8	C9	H14	240.3	119.9
N23	C22	C21	C26	0.2	0.2
C24	N23	C22	H21	179.9	180.0
N23	C24	N25	C26	0.2	359.7
C22	C21	C26	N25	359.9	359.5
C22	C21	C26	H22	179.9	179.7
C4	C9	C8	N7	46.2	59.2
C6	N7	C8	C10	126.3	124.1
C8	N7	C6	H10	315.5	301.7
C8	N7	C6	H11	193.8	181.8
C9	C8	N7	H13	120.1	240.0
C9	C8	N7	H14	239.8	120.0
C8	N7	C10	H17	295.1	54.2
C8	N7	C10	H18	54.3	174.2
H13	C8	N7	H14	119.7	240.0
C6	N7	C10	C8	235.1	235.8
C10	N7	C6	H10	83.9	65.8
C10	N7	C6	H11	322.2	305.8
C10	N7	C8	H13	54.3	294.2
C10	N7	C8	H14	294.5	54.2
C11	C10	N7	H17	239.6	240.0
C11	C10	N7	H18	120.4	120.0
H17	C10	N7	H18	240.8	240.0
C13	C12	C11	N16	1.4	0.2
C14	C13	C12	H19	178.7	180.0
C13	C14	C15	N16	0.1	359.7
C13	C14	C15	C17	179.9	180.0
C21	C26	N25	C24	359.9	0.5
C24	N25	C26	H22	179.9	180.3
C12	C11	C10	H17	285.6	335.3
C12	C11	C10	H18	166.4	215.3
C12	C11	N16	C15	359.3	359.4
N20	C14	C13	H20	0.7	0.1
C15	C14	C13	H20	180.6	180.1
C11	N16	C15	C14	359.9	0.6
N16	C15	C14	C17	180.2	179.7
C14	C15	C17	N28	178.8	180.0
C24	N25	C26	C21	359.9	0.5
N25	C26	C21	H22	180.0	179.8
C19	N18	C17	N28	180.7	180.0
N7	C10	C11	H17	120.4	120.0
N7	C10	C11	H18	239.6	240.0
H17	C10	C11	H18	119.2	120.0
C14	C15	N16	C11	359.9	0.6
N16	C11	C10	H17	104.6	155.0
N16	C11	C10	H18	345.5	35.0
C11	N16	C15	C17	180.2	180.3
C21	C26	N25	H22	180.0	180.2
C14	C15	N16	C17	179.8	180.3
N16	C15	C17	N28	358.6	0.3
C14	C15	C17	N16	180.2	179.7
N18	C17	C15	N28	182.0	180.0
C15	C17	N28	C29	198.1	180.0
C15	C17	N18	N28	178.0	180.0
N18	C17	N28	C29	16.1	360.0
C33	N28	C29	H25	81.7	61.3
C33	N28	C29	H26	201.7	181.4
H29	C32	C33	H30	240.4	120.1
C17	N28	C29	C30	188.1	177.6
C17	N28	C29	H25	308.1	297.5
C17	N28	C29	H26	68.1	57.7
N28	C29	C30	O31	335.5	56.8
C30	C29	N28	H25	240.0	240.1
C30	C29	N28	H26	120.0	120.0
N28	C29	C30	H27	95.7	176.8
N28	C29	C30	H28	215.3	296.9
H25	C29	N28	H26	240.0	239.9
C32	O31	C30	H27	302.2	181.4
C32	O31	C30	H28	182.6	61.3
N28	C29	C30	H25	120.0	119.9
N28	C29	C30	H26	240.0	240.0
O31	C30	C29	H27	239.8	240.1
O31	C30	C29	H28	120.2	120.0
H25	C29	C30	H26	120.0	120.1
H27	C30	C29	H28	240.4	239.9
O31	C30	C29	H25	215.5	297.0
O31	C30	C29	H26	95.5	176.8
C29	C30	O31	H27	120.2	119.9
C29	C30	O31	H28	239.8	240.1
H27	C30	O31	H28	119.6	120.2
C2	C1	H1	H2	120.0	120.0
C2	C1	H1	H3	240.0	240.0
H2	C1	H1	H3	120.0	120.0
C2	C1	H2	H1	240.0	240.0
C2	C1	H2	H3	120.0	120.0
H1	C1	H2	H3	240.0	240.1
C2	C1	H3	H1	120.0	120.0
C2	C1	H3	H2	240.0	240.0
H1	C1	H3	H2	120.0	120.0
H4	C3	C2	C4	299.1	300.0
H5	C3	H4	H6	120.0	120.0
H5	C3	C2	C4	59.2	60.0
H4	C3	H5	H6	240.0	240.1
H6	C3	C2	C4	179.2	180.0
H4	C3	H6	H5	120.0	120.0
C2	C4	H7	C5	118.1	120.1
C2	C4	H7	C9	237.3	239.8
C5	C4	H7	C9	119.2	119.7
H7	C4	C5	C6	304.0	297.6
H7	C4	C5	H8	63.1	57.6
H7	C4	C5	H9	184.9	177.7
H7	C4	C9	C8	69.2	62.3
H7	C4	C9	H15	189.6	182.2
H7	C4	C9	H16	308.8	302.3
H8	C5	C4	C9	181.4	177.6
C4	C5	H8	C6	245.1	240.1
H8	C5	C4	H7	63.1	57.6
C4	C5	H8	H9	122.5	120.1
H8	C5	C6	N7	166.2	180.9
C6	C5	H8	H9	237.5	240.0
H8	C5	C6	H10	285.4	300.8
H8	C5	C6	H11	47.0	60.8
H9	C5	C4	C9	303.2	297.7
C4	C5	H9	C6	114.9	119.8
H9	C5	C4	H7	184.9	177.7
C4	C5	H9	H8	237.5	239.9
H9	C5	C6	N7	44.4	60.8
C6	C5	H9	H8	122.6	120.1
H9	C5	C6	H10	163.6	180.7
H9	C5	C6	H11	285.2	300.7
C5	C6	H10	N7	244.7	240.0
H10	C6	C5	H8	285.4	300.8
H10	C6	C5	H9	163.6	180.7
C5	C6	H10	H11	122.3	120.0
H10	C6	N7	C8	315.5	301.7
H10	C6	N7	C10	83.9	65.8
N7	C6	H10	H11	237.7	240.0
C5	C6	H11	N7	115.3	120.1
H11	C6	C5	H8	47.0	60.8
H11	C6	C5	H9	285.2	300.7
C5	C6	H11	H10	237.7	240.0
H11	C6	N7	C8	193.8	181.8
H11	C6	N7	C10	322.2	305.8
N7	C6	H11	H10	122.3	119.9
C9	C8	H13	H14	119.6	240.1
H13	C8	N7	C10	54.3	294.2
N7	C8	H13	H14	240.4	120.0
C9	C8	H14	H13	240.4	119.9
H14	C8	N7	C10	294.5	54.2
N7	C8	H14	H13	119.6	240.0
C4	C9	H15	C8	237.7	240.2
H15	C9	C4	H7	189.6	182.2
C4	C9	H15	H16	118.9	120.1
H15	C9	C8	H13	46.0	179.2
H15	C9	C8	H14	165.7	59.3
C4	C9	H16	C8	122.3	119.9
H16	C9	C4	H7	308.8	302.3
C4	C9	H16	H15	241.2	240.0
H16	C9	C8	H13	286.8	59.1
H16	C9	C8	H14	46.5	299.2
N7	C10	H17	H18	118.7	120.0
C11	C10	H17	H18	241.3	240.0
N7	C10	H18	H17	241.3	240.0
C11	C10	H18	H17	118.7	120.0
H19	C12	C11	N16	181.4	180.3
H20	C13	C12	H19	358.7	359.9
H20	C13	C14	C15	180.6	180.1
H21	C22	C21	C26	180.2	180.2
C21	C26	H22	N25	180.0	179.8
N28	C29	H25	C30	240.0	240.3
N28	C29	H25	H26	120.0	120.1
H25	C29	C30	O31	215.5	297.0
C30	C29	H25	H26	240.0	239.9
H25	C29	C30	H27	335.7	56.9
H25	C29	C30	H28	95.3	177.0
N28	C29	H26	C30	120.0	119.8
N28	C29	H26	H25	240.0	239.9
H26	C29	C30	O31	95.5	176.8
C30	C29	H26	H25	120.0	120.1
H26	C29	C30	H27	215.7	296.7
H26	C29	C30	H28	335.3	56.9
C29	C30	H27	O31	238.8	240.2
H27	C30	C29	H25	335.7	56.9
H27	C30	C29	H26	215.7	296.7
C29	C30	H27	H28	119.4	120.1
O31	C30	H27	H28	240.6	239.9
C29	C30	H28	O31	121.2	119.8
H28	C30	C29	H25	95.3	177.0
H28	C30	C29	H26	335.3	56.9
C29	C30	H28	H27	240.6	239.9
O31	C30	H28	H27	119.4	120.1
C33	C32	H29	H30	119.4	239.9
C33	C32	H30	H29	240.6	120.1
H31	C33	C32	H29	328.5	63.3
H31	C33	C32	H30	88.1	303.2
H32	C33	C32	H29	207.9	303.1
H32	C33	C32	H30	327.5	183.0