Atom Nomenclature for 0S0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0S0

Atom Name (V3) Atom Name (V2)
O01 O01
C02 C02
N03 N03
C04 C04
O05 O05
C06 C06
C07 C07
C08 C08
N09 N09
N10 N10
C11 C11
C12 C12
C13 C13
C14 C14
S15 S15
O16 O16
N17 N17
O18 O18
C19 C19
C20 C20
H1 H1
H2 H2
H3 H3
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11