PDB Chemical Component 0R7
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0R7
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O7 |
P3 |
1.501 |
1.479 |
| O6 |
P3 |
1.598 |
1.610 |
| P3 |
O5 |
1.597 |
1.610 |
| P3 |
O3 |
1.609 |
1.610 |
| O9 |
P2 |
1.606 |
1.480 |
| O11 |
P1 |
1.492 |
1.480 |
| O3 |
P2 |
1.604 |
1.610 |
| P2 |
O8 |
1.483 |
1.610 |
| P2 |
O1 |
1.612 |
1.611 |
| C5' |
O5' |
1.436 |
1.429 |
| C5' |
C4' |
1.547 |
1.530 |
| P1 |
O1 |
1.603 |
1.609 |
| P1 |
O5' |
1.592 |
1.609 |
| P1 |
O10 |
1.600 |
1.611 |
| C4' |
C3' |
1.547 |
1.550 |
| C4' |
O4' |
1.445 |
1.436 |
| C3' |
C2' |
1.541 |
1.555 |
| O4' |
C1' |
1.435 |
1.432 |
| C2' |
C1' |
1.551 |
1.544 |
| C1' |
N1 |
1.464 |
1.466 |
| C6 |
N1 |
1.354 |
1.360 |
| C6 |
C5 |
1.337 |
1.382 |
| N1 |
C2 |
1.353 |
1.342 |
| C02 |
C03 |
1.399 |
1.366 |
| C02 |
C01 |
1.399 |
1.399 |
| C03 |
C04 |
1.398 |
1.398 |
| C1 |
C3 |
1.198 |
1.174 |
| C1 |
C5 |
1.432 |
1.431 |
| C3 |
C01 |
1.435 |
1.432 |
| C5 |
C4 |
1.466 |
1.468 |
| C01 |
C |
1.396 |
1.399 |
| C04 |
C7 |
1.442 |
1.432 |
| C04 |
C05 |
1.398 |
1.397 |
| C2 |
O2 |
1.227 |
1.220 |
| C2 |
N2 |
1.435 |
1.332 |
| C7 |
C8 |
1.202 |
1.173 |
| C |
C05 |
1.395 |
1.367 |
| C4 |
N2 |
1.267 |
1.325 |
| C4 |
N3 |
1.325 |
1.374 |
| O5 |
H1 |
0.950 |
0.967 |
| O6 |
H2 |
0.950 |
0.967 |
| O8 |
H3 |
0.950 |
0.968 |
| O10 |
H4 |
0.950 |
0.967 |
| C1' |
H5 |
1.100 |
1.090 |
| C6 |
H6 |
1.080 |
1.080 |
| N3 |
H7 |
1.000 |
0.969 |
| N3 |
H8 |
1.000 |
0.970 |
| C4' |
H9 |
1.100 |
1.090 |
| C3' |
H10 |
1.100 |
1.090 |
| C3' |
H11 |
1.100 |
1.090 |
| C2' |
H12 |
1.100 |
1.090 |
| C2' |
H13 |
1.100 |
1.091 |
| C5' |
H14 |
1.100 |
1.090 |
| C5' |
H15 |
1.100 |
1.090 |
| C02 |
H16 |
1.080 |
1.080 |
| C03 |
H17 |
1.080 |
1.080 |
| C05 |
H18 |
1.080 |
1.080 |
| C |
H19 |
1.080 |
1.079 |
| C8 |
H20 |
1.060 |
1.051 |
Bond Angles for 0R7
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| P3 |
O5 |
H1 |
109.5 |
114.0 |
| O3 |
P2 |
O8 |
110.2 |
109.5 |
| P2 |
O8 |
H3 |
109.5 |
114.0 |
| C5' |
C4' |
H9 |
109.9 |
110.3 |
| O1 |
P1 |
O10 |
112.0 |
109.5 |
| P1 |
O10 |
H4 |
109.5 |
114.0 |
| C4' |
C3' |
C2' |
102.1 |
101.0 |
| C3' |
C4' |
H9 |
109.8 |
110.3 |
| C4' |
C3' |
H10 |
111.3 |
111.1 |
| C4' |
C3' |
H11 |
111.3 |
111.1 |
| C2' |
C3' |
H10 |
111.3 |
111.2 |
| C2' |
C3' |
H11 |
111.3 |
111.1 |
| C3' |
C2' |
H12 |
111.0 |
110.9 |
| C3' |
C2' |
H13 |
111.0 |
110.8 |
| O4' |
C1' |
H5 |
109.4 |
109.9 |
| C2' |
C1' |
H5 |
107.9 |
109.8 |
| C1' |
N1 |
C2 |
118.9 |
119.5 |
| N1 |
C1' |
H5 |
109.0 |
109.8 |
| C6 |
N1 |
C2 |
119.9 |
121.1 |
| C6 |
C5 |
C4 |
121.3 |
118.0 |
| C5 |
C6 |
H6 |
120.1 |
120.6 |
| N1 |
C2 |
O2 |
123.1 |
118.9 |
| N1 |
C2 |
N2 |
120.0 |
122.2 |
| C02 |
C03 |
C04 |
119.8 |
120.0 |
| C03 |
C02 |
H16 |
120.3 |
120.0 |
| C02 |
C03 |
H17 |
120.1 |
120.0 |
| C02 |
C01 |
C |
120.8 |
120.0 |
| C03 |
C04 |
C7 |
120.0 |
120.0 |
| C03 |
C04 |
C05 |
120.3 |
120.1 |
| C04 |
C03 |
H17 |
120.1 |
120.0 |
| C1 |
C3 |
C01 |
176.8 |
180.0 |
| C1 |
C5 |
C4 |
115.8 |
121.0 |
| C3 |
C01 |
C |
118.5 |
120.0 |
| C5 |
C4 |
N2 |
117.5 |
118.8 |
| C5 |
C4 |
N3 |
119.0 |
120.6 |
| C01 |
C |
C05 |
119.5 |
119.9 |
| C01 |
C |
H19 |
120.2 |
120.1 |
| C05 |
C04 |
C7 |
119.7 |
120.0 |
| C04 |
C7 |
C8 |
179.5 |
179.9 |
| C04 |
C05 |
H18 |
119.9 |
120.0 |
| C7 |
C8 |
H20 |
180.0 |
179.9 |
| C |
C05 |
H18 |
120.0 |
119.9 |
| C4 |
N3 |
H7 |
120.0 |
120.0 |
| C4 |
N3 |
H8 |
120.0 |
120.0 |
| H7 |
N3 |
H8 |
120.0 |
120.0 |
| H10 |
C3' |
H11 |
109.5 |
111.0 |
| H12 |
C2' |
H13 |
109.5 |
110.9 |
| H14 |
C5' |
H15 |
109.5 |
109.5 |
Torsion Angles for 0R7
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O7 |
P3 |
O5 |
H1 |
0.0 |
180.0 |
| O6 |
P3 |
O5 |
H1 |
237.8 |
300.0 |
| P3 |
O3 |
P2 |
O8 |
250.9 |
285.0 |
| O9 |
P2 |
O8 |
H3 |
0.0 |
180.0 |
| O11 |
P1 |
O10 |
H4 |
360.0 |
180.0 |
| O3 |
P2 |
O8 |
H3 |
127.4 |
300.0 |
| P2 |
O1 |
P1 |
O10 |
102.8 |
80.0 |
| C3' |
C4' |
C5' |
H9 |
237.6 |
237.9 |
| C5' |
C4' |
C3' |
H10 |
325.1 |
322.6 |
| C5' |
C4' |
C3' |
H11 |
87.4 |
86.7 |
| O1 |
P1 |
O10 |
H4 |
232.7 |
60.0 |
| C5' |
C4' |
C3' |
H9 |
122.4 |
122.1 |
| C2' |
C3' |
C4' |
H10 |
241.2 |
242.0 |
| C2' |
C3' |
C4' |
H11 |
118.8 |
117.9 |
| C4' |
C3' |
C2' |
H12 |
153.7 |
276.0 |
| C4' |
C3' |
C2' |
H13 |
275.7 |
152.3 |
| H10 |
C3' |
C4' |
H11 |
237.6 |
235.9 |
| C4' |
O4' |
C1' |
H5 |
115.2 |
117.9 |
| C2' |
C3' |
C4' |
H9 |
83.8 |
82.5 |
| C4' |
C3' |
C2' |
H10 |
118.8 |
117.9 |
| C4' |
C3' |
C2' |
H11 |
241.2 |
242.1 |
| C3' |
C2' |
C1' |
H5 |
221.3 |
219.0 |
| H10 |
C3' |
C2' |
H11 |
122.4 |
124.2 |
| H12 |
C2' |
C3' |
H13 |
238.0 |
123.7 |
| C2' |
C1' |
O4' |
H5 |
244.3 |
240.4 |
| N1 |
C1' |
O4' |
H5 |
121.2 |
120.8 |
| O4' |
C1' |
C2' |
H5 |
116.7 |
119.6 |
| N1 |
C1' |
C2' |
H5 |
239.4 |
239.2 |
| O4' |
C1' |
N1 |
H5 |
238.6 |
239.1 |
| C2' |
C1' |
N1 |
H5 |
120.0 |
120.8 |
| C6 |
N1 |
C1' |
C2 |
182.5 |
180.3 |
| C1' |
N1 |
C2 |
O2 |
0.5 |
360.0 |
| C1' |
N1 |
C2 |
N2 |
182.1 |
179.7 |
| C1' |
N1 |
C6 |
C2 |
177.5 |
179.7 |
| C6 |
N1 |
C1' |
H5 |
144.0 |
147.0 |
| C6 |
N1 |
C2 |
O2 |
178.0 |
179.7 |
| C6 |
N1 |
C2 |
N2 |
359.7 |
359.4 |
| C5 |
C6 |
N1 |
C2 |
359.9 |
0.3 |
| C1 |
C5 |
C6 |
C4 |
180.2 |
180.0 |
| C6 |
C5 |
C4 |
N2 |
359.4 |
360.0 |
| C6 |
C5 |
C4 |
N3 |
179.1 |
180.0 |
| C2 |
N1 |
C1' |
H5 |
321.5 |
326.7 |
| C03 |
C02 |
C01 |
C |
0.0 |
0.3 |
| C02 |
C03 |
C04 |
C7 |
180.0 |
180.0 |
| C02 |
C03 |
C04 |
C05 |
0.2 |
0.1 |
| C04 |
C03 |
C02 |
H17 |
180.0 |
179.9 |
| C3 |
C01 |
C02 |
C |
179.5 |
179.7 |
| C02 |
C01 |
C |
C05 |
359.8 |
359.4 |
| C02 |
C01 |
C |
H19 |
179.8 |
179.7 |
| C04 |
C03 |
C02 |
H16 |
180.0 |
180.0 |
| C02 |
C03 |
C04 |
H17 |
180.0 |
180.1 |
| C05 |
C04 |
C03 |
C7 |
180.2 |
180.1 |
| C03 |
C04 |
C7 |
C8 |
331.2 |
125.4 |
| C03 |
C04 |
C05 |
H18 |
179.6 |
179.9 |
| C3 |
C1 |
C5 |
C4 |
1.4 |
305.6 |
| C1 |
C3 |
C01 |
C |
312.0 |
157.4 |
| C6 |
C5 |
C1 |
C4 |
179.8 |
180.0 |
| C1 |
C5 |
C6 |
H6 |
0.8 |
360.0 |
| C1 |
C5 |
C4 |
N2 |
179.2 |
180.0 |
| C1 |
C5 |
C4 |
N3 |
358.9 |
0.0 |
| C02 |
C01 |
C3 |
C |
180.5 |
180.3 |
| C3 |
C01 |
C |
C05 |
180.3 |
179.7 |
| C3 |
C01 |
C |
H19 |
0.3 |
0.0 |
| C4 |
C5 |
C6 |
H6 |
180.6 |
180.0 |
| C5 |
C4 |
N3 |
H7 |
180.3 |
359.9 |
| C5 |
C4 |
N3 |
H8 |
0.3 |
180.0 |
| C01 |
C |
C05 |
H18 |
180.3 |
180.3 |
| C03 |
C04 |
C7 |
C05 |
180.2 |
180.1 |
| C7 |
C04 |
C03 |
H17 |
0.0 |
359.9 |
| C7 |
C04 |
C05 |
H18 |
359.8 |
0.0 |
| C04 |
C7 |
C8 |
H20 |
272.2 |
161.8 |
| C03 |
C04 |
C05 |
C7 |
179.8 |
179.9 |
| C05 |
C04 |
C03 |
H17 |
180.2 |
180.0 |
| C01 |
C |
C05 |
C04 |
0.4 |
0.6 |
| C05 |
C04 |
C7 |
C8 |
151.0 |
305.3 |
| C |
C05 |
C04 |
H18 |
180.0 |
179.7 |
| N1 |
C2 |
O2 |
N2 |
181.6 |
179.8 |
| N1 |
C2 |
N2 |
O2 |
178.4 |
180.2 |
| C01 |
C |
C05 |
H19 |
180.0 |
180.3 |
| C |
C05 |
C04 |
C7 |
179.8 |
179.7 |
| C04 |
C05 |
C |
H18 |
180.0 |
180.3 |
| N1 |
C2 |
N2 |
C4 |
0.3 |
0.5 |
| C5 |
C4 |
N2 |
N3 |
179.7 |
180.0 |
| C5 |
C4 |
N3 |
N2 |
180.3 |
180.0 |
| H7 |
N3 |
C4 |
H8 |
180.0 |
179.9 |
| H5 |
C1' |
N1 |
C2 |
321.5 |
326.7 |
| H6 |
C6 |
N1 |
C2 |
179.9 |
180.3 |
| H6 |
C6 |
C5 |
C4 |
180.6 |
180.0 |
| C4 |
N3 |
H7 |
H8 |
180.0 |
180.1 |
| C4 |
N3 |
H8 |
H7 |
180.0 |
179.9 |
| H9 |
C4' |
C3' |
C2' |
83.8 |
82.5 |
| H9 |
C4' |
C3' |
H10 |
202.6 |
200.4 |
| H9 |
C4' |
C3' |
H11 |
325.0 |
324.5 |
| C4' |
C3' |
H10 |
C2' |
246.8 |
248.4 |
| H10 |
C3' |
C4' |
H9 |
202.6 |
200.4 |
| C4' |
C3' |
H10 |
H11 |
123.4 |
124.1 |
| C2' |
C3' |
H10 |
H11 |
236.6 |
235.7 |
| H10 |
C3' |
C2' |
H12 |
34.9 |
158.1 |
| H10 |
C3' |
C2' |
H13 |
156.9 |
34.4 |
| C4' |
C3' |
H11 |
C2' |
113.2 |
111.5 |
| H11 |
C3' |
C4' |
H9 |
325.0 |
324.5 |
| C4' |
C3' |
H11 |
H10 |
236.6 |
235.9 |
| C2' |
C3' |
H11 |
H10 |
123.4 |
124.3 |
| H11 |
C3' |
C2' |
H12 |
272.5 |
33.8 |
| H11 |
C3' |
C2' |
H13 |
34.5 |
270.2 |
| H12 |
C2' |
C3' |
H10 |
34.9 |
158.1 |
| H12 |
C2' |
C3' |
H11 |
272.5 |
33.8 |
| C3' |
C2' |
H12 |
H13 |
122.9 |
236.4 |
| H12 |
C2' |
C1' |
H5 |
102.3 |
337.2 |
| H13 |
C2' |
C3' |
H10 |
156.9 |
34.4 |
| H13 |
C2' |
C3' |
H11 |
34.5 |
270.2 |
| C3' |
C2' |
H13 |
H12 |
237.1 |
123.6 |
| H13 |
C2' |
C1' |
H5 |
340.3 |
100.9 |
| H14 |
C5' |
C4' |
H9 |
59.8 |
187.1 |
| H15 |
C5' |
C4' |
H9 |
300.3 |
67.1 |
| H16 |
C02 |
C03 |
C04 |
180.0 |
180.0 |
| H16 |
C02 |
C03 |
H17 |
360.0 |
0.1 |
| H16 |
C02 |
C01 |
C |
180.0 |
180.2 |
| C02 |
C03 |
H17 |
C04 |
180.0 |
179.9 |
| H17 |
C03 |
C02 |
H16 |
360.0 |
0.1 |
| H17 |
C03 |
C04 |
C7 |
0.0 |
359.9 |
| H17 |
C03 |
C04 |
C05 |
180.2 |
180.0 |
| H18 |
C05 |
C04 |
C7 |
359.8 |
0.0 |
| C01 |
C |
H19 |
C05 |
180.0 |
179.7 |
| H19 |
C |
C05 |
H18 |
0.3 |
0.0 |