PDB Chemical Component 0R6

Ideal Model

Chemical Description

Name 2'-deoxy-5-[(4-ethynylphenyl)ethynyl]cytidine 5'-(tetrahydrogen triphosphate)
Formula C19 H20 N3 O13 P3
Formal charge 0
Molecular weight 591.296 g/mol
Component type NON-POLYMER

Chemical features

Atom count 58
Chiral atom count 3
Chiral atoms C1' C3' C4'
Bond count 60
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5-[(4-ethynylphenyl)ethynyl]cytidine 5'-(tetrahydrogen triphosphate)
Systematic name (OpenEye OEToolkits) [[(2R,3S,5R)-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3
SMILES (CACTVS) NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3
Stereo SMILES (OpenEye) C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O
InChI descriptor InChI=1S/C19H20N3O13P3/c1-2-12-3-5-13(6-4-12)7-8-14-10-22(19(24)21-18(14)20)17-9-15(23)16(33-17)11-32-37(28,29)35-38(30,31)34-36(25,26)27/h1,3-6,10,15-17,23H,9,11H2,(H,28,29)(H,30,31)(H2,20,21,24)(H2,25,26,27)/t15-,16+,17+/m0/s1
InChIKey descriptor CPJFKEBWOPVPDF-GVDBMIGSSA-N

Status Information

Last modified 2013-03-22
Created 2012-04-27
Release status REL
Model PDB code 4ELU
Processing site RCSB