PDB Chemical Component 0R6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0R6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1G |
PG |
1.517 |
1.480 |
| O3G |
PG |
1.515 |
1.610 |
| PG |
O2G |
1.510 |
1.610 |
| PG |
O3B |
1.617 |
1.609 |
| O1B |
PB |
1.505 |
1.480 |
| O1A |
PA |
1.504 |
1.480 |
| O3B |
PB |
1.606 |
1.610 |
| PB |
O2B |
1.510 |
1.610 |
| PB |
O3A |
1.615 |
1.610 |
| C5' |
O5' |
1.431 |
1.430 |
| C5' |
C4' |
1.527 |
1.530 |
| PA |
O3A |
1.618 |
1.610 |
| PA |
O5' |
1.595 |
1.609 |
| PA |
O2A |
1.510 |
1.610 |
| O3' |
C3' |
1.441 |
1.429 |
| C4' |
C3' |
1.520 |
1.550 |
| C4' |
O4' |
1.430 |
1.446 |
| C3' |
C2' |
1.525 |
1.549 |
| O4' |
C1' |
1.426 |
1.438 |
| C2' |
C1' |
1.527 |
1.540 |
| C33 |
C32 |
1.395 |
1.366 |
| C33 |
C34 |
1.382 |
1.397 |
| C1' |
N1 |
1.483 |
1.466 |
| C32 |
C31 |
1.395 |
1.399 |
| C38 |
C37 |
1.276 |
1.174 |
| C37 |
C34 |
1.285 |
1.432 |
| C34 |
C35 |
1.400 |
1.397 |
| C6 |
N1 |
1.353 |
1.359 |
| C6 |
C5 |
1.403 |
1.382 |
| N1 |
C2 |
1.409 |
1.343 |
| C31 |
C30 |
1.316 |
1.431 |
| C31 |
C36 |
1.396 |
1.400 |
| C30 |
C29 |
1.206 |
1.174 |
| C29 |
C5 |
1.311 |
1.433 |
| C5 |
C4 |
1.482 |
1.467 |
| C35 |
C36 |
1.404 |
1.365 |
| C2 |
O2 |
1.253 |
1.219 |
| C2 |
N3 |
1.361 |
1.331 |
| C4 |
N3 |
1.356 |
1.325 |
| C4 |
N4 |
1.355 |
1.373 |
| N4 |
H1 |
1.000 |
0.970 |
| N4 |
H2 |
1.000 |
0.970 |
| C36 |
H3 |
1.080 |
1.079 |
| C35 |
H4 |
1.080 |
1.080 |
| C38 |
H5 |
1.061 |
1.050 |
| C33 |
H6 |
1.080 |
1.080 |
| C32 |
H7 |
1.080 |
1.080 |
| C6 |
H8 |
1.080 |
1.080 |
| C1' |
H9 |
1.100 |
1.090 |
| C2' |
H10 |
1.100 |
1.090 |
| C2' |
H11 |
1.100 |
1.090 |
| C3' |
H12 |
1.100 |
1.090 |
| O3' |
H13 |
0.950 |
0.967 |
| C4' |
H14 |
1.100 |
1.090 |
| C5' |
H15 |
1.100 |
1.090 |
| C5' |
H16 |
1.100 |
1.090 |
| O2A |
H17 |
0.950 |
0.967 |
| O2B |
H18 |
0.950 |
0.967 |
| O3G |
H19 |
0.950 |
0.966 |
| O2G |
H20 |
0.950 |
0.967 |
Bond Angles for 0R6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1G |
PG |
O2G |
114.1 |
109.5 |
| O3G |
PG |
O2G |
113.5 |
109.4 |
| PG |
O2G |
H20 |
109.5 |
114.0 |
| O1B |
PB |
O2B |
117.6 |
109.5 |
| O1A |
PA |
O3A |
112.8 |
109.5 |
| O1A |
PA |
O2A |
117.0 |
109.4 |
| PB |
O2B |
H18 |
109.5 |
114.0 |
| O5' |
C5' |
H15 |
109.8 |
109.4 |
| O5' |
C5' |
H16 |
109.8 |
109.5 |
| C5' |
C4' |
H14 |
108.1 |
110.7 |
| O2A |
PA |
O3A |
105.1 |
109.4 |
| PA |
O2A |
H17 |
109.5 |
114.0 |
| O3' |
C3' |
H12 |
111.0 |
110.8 |
| C4' |
C3' |
H12 |
109.8 |
110.9 |
| C3' |
C2' |
H10 |
110.9 |
110.5 |
| C3' |
C2' |
H11 |
110.9 |
110.6 |
| O4' |
C1' |
H9 |
111.9 |
109.9 |
| C2' |
C1' |
H9 |
110.4 |
109.9 |
| C32 |
C33 |
H6 |
120.4 |
120.0 |
| C33 |
C32 |
H7 |
118.9 |
120.0 |
| C34 |
C35 |
H4 |
119.9 |
120.0 |
| N1 |
C6 |
H8 |
119.4 |
120.6 |
| C31 |
C36 |
H3 |
119.9 |
120.0 |
| C35 |
C36 |
H3 |
119.9 |
120.1 |
| C4 |
N4 |
H1 |
120.0 |
120.0 |
| C4 |
N4 |
H2 |
120.0 |
120.0 |
| H1 |
N4 |
H2 |
120.0 |
120.0 |
| H10 |
C2' |
H11 |
109.5 |
110.4 |
| H15 |
C5' |
H16 |
109.5 |
109.5 |
Torsion Angles for 0R6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3G |
PG |
O1G |
O2G |
227.0 |
240.0 |
| O1G |
PG |
O2G |
H20 |
360.0 |
300.1 |
| O1G |
PG |
O3G |
O2G |
133.3 |
120.0 |
| O3G |
PG |
O2G |
H20 |
133.4 |
60.0 |
| O1B |
PB |
O2B |
H18 |
360.0 |
180.0 |
| O2A |
PA |
O1A |
O3A |
238.0 |
240.0 |
| O1A |
PA |
O2A |
H17 |
360.0 |
179.9 |
| O3B |
PB |
O2B |
H18 |
127.3 |
300.0 |
| O5' |
C5' |
C4' |
H14 |
182.1 |
308.0 |
| H15 |
C5' |
O5' |
H16 |
239.6 |
120.0 |
| C5' |
C4' |
C3' |
H12 |
319.5 |
322.6 |
| O1A |
PA |
O3A |
O2A |
231.5 |
240.0 |
| O3A |
PA |
O2A |
H17 |
234.0 |
60.0 |
| PA |
O5' |
C5' |
H15 |
339.5 |
60.1 |
| PA |
O5' |
C5' |
H16 |
99.9 |
300.0 |
| O1A |
PA |
O2A |
O3A |
126.0 |
120.0 |
| C4' |
C3' |
O3' |
H12 |
236.7 |
236.3 |
| O3' |
C3' |
C2' |
H10 |
272.5 |
20.5 |
| O3' |
C3' |
C2' |
H11 |
34.3 |
257.9 |
| O3' |
C3' |
C4' |
H12 |
123.9 |
123.7 |
| C4' |
C3' |
C2' |
H10 |
152.4 |
262.2 |
| C4' |
C3' |
C2' |
H11 |
274.3 |
139.6 |
| O4' |
C4' |
C3' |
H12 |
82.6 |
81.2 |
| C4' |
O4' |
C1' |
H9 |
120.7 |
93.2 |
| C3' |
C2' |
C1' |
H9 |
216.9 |
242.4 |
| H10 |
C2' |
C3' |
H11 |
238.1 |
122.6 |
| C2' |
C1' |
O4' |
H9 |
239.7 |
240.4 |
| O4' |
C1' |
C2' |
H9 |
121.3 |
119.5 |
| C33 |
C34 |
C35 |
H4 |
179.7 |
180.0 |
| C1' |
N1 |
C6 |
H8 |
358.2 |
359.5 |
| C32 |
C31 |
C36 |
H3 |
181.3 |
180.3 |
| C37 |
C34 |
C35 |
H4 |
0.8 |
0.1 |
| C34 |
C35 |
C36 |
H3 |
179.3 |
180.0 |
| C35 |
C36 |
C31 |
H3 |
180.0 |
179.9 |
| C5 |
C4 |
N4 |
H1 |
179.2 |
180.1 |
| C5 |
C4 |
N4 |
H2 |
359.2 |
359.9 |
| C31 |
C36 |
C35 |
H3 |
180.0 |
180.1 |
| H1 |
N4 |
C4 |
H2 |
180.0 |
180.1 |
| C4 |
N4 |
H1 |
H2 |
180.0 |
179.9 |
| C4 |
N4 |
H2 |
H1 |
180.0 |
180.1 |
| H4 |
C35 |
C36 |
H3 |
359.3 |
359.9 |
| H6 |
C33 |
C32 |
H7 |
0.0 |
359.6 |
| H7 |
C32 |
C33 |
H6 |
0.0 |
359.6 |
| C3' |
C2' |
H10 |
H11 |
122.7 |
237.3 |
| H10 |
C2' |
C1' |
H9 |
97.9 |
1.1 |
| C3' |
C2' |
H11 |
H10 |
237.3 |
122.6 |
| H11 |
C2' |
C1' |
H9 |
336.0 |
123.7 |
| H12 |
C3' |
C2' |
H10 |
36.1 |
144.0 |
| H12 |
C3' |
C2' |
H11 |
158.0 |
21.4 |
| H13 |
O3' |
C3' |
H12 |
303.3 |
297.9 |
| H14 |
C4' |
C3' |
H12 |
199.3 |
199.6 |
| O5' |
C5' |
H15 |
H16 |
120.6 |
240.0 |
| H15 |
C5' |
C4' |
H14 |
62.3 |
67.9 |
| O5' |
C5' |
H16 |
H15 |
239.4 |
120.0 |
| H16 |
C5' |
C4' |
H14 |
301.9 |
188.0 |
| H17 |
O2A |
PA |
O3A |
234.0 |
60.0 |
| H19 |
O3G |
PG |
O2G |
226.7 |
60.0 |