Atom Nomenclature for 0R6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0R6

Atom Name (V3) Atom Name (V2)
O2 O2
C2 C2
N3 N3
C4 C4
N4 N4
C5 C5
C29 C29
C30 C30
C31 C31
C36 C36
C35 C35
C34 C34
C37 C37
C38 C38
C33 C33
C32 C32
C6 C6
N1 N1
C1' C1'
C2' C2'
C3' C3'
O3' O3'
O4' O4'
C4' C4'
C5' C5'
O5' O5'
PA PA
O1A O1A
O2A O2A
O3A O3A
PB PB
O1B O1B
O2B O2B
O3B O3B
PG PG
O3G O3G
O1G O1G
O2G O2G
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20