Atom Nomenclature for 0QS

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0QS

Atom Name (V3) Atom Name (V2)
S S1
O1S O1
O2S O2
C C1
C1 C2
C2 C3
C3 C4
N3 N9
CA C6
CB C7
CG C8
CD1 C9
CD2 C10
CE1 C11
CE2 C12
CZ C13
C4 C14
O O3
N N1
CA1 C15
C5 C16
O1 O5
CB1 C17
CG1 C18
ND1 N2
CD21 C19
CE11 C20
NE2 N3
N1 N4
CA2 C21
CB2 C22
CG2 C23
CD11 C24
CD22 C25
CE12 C26
CE21 C27
CZ1 C28
CH C29
OH1 O7
OH2 O8
CM1 C30
F1 F1
F2 F2
C6 C31
O2 O9
O11 O11
C21 C32
C31 C33
N4 N5
C51 C34
C61 C35
C1' C36
C2' C37
N2' N6
H11 H1
H12 H2
H13 H3
H21 H4
H22 H5
H23 H6
H31 H7
H32 H8
H33 H9
HM2 H12
HA H14
HB1 H15
HB2 H16
HD1 H17
HD2 H18
HE1 H19
HE2 H20
HZ H21
H H23
HA1 H25
HB21 H26
HB3 H27
HD11 H28
HD21 H29
HE11 H30
HE21 H31
H1 H33
HA2 H35
HB22 H36
HB31 H37
HG H38
HD12 H39
HD13 H40
HD23 H41
HD22 H42
HE12 H43
HE13 H44
HE23 H45
HE22 H46
HZ2 H47
HZ3 H48
HH1 H49
HH2 H50
H211 H52
H221 H53
H311 H54
H321 H55
H51 H56
H52 H57
H61 H58
H62 H59
H1'1 H60
H1'2 H61
H2'1 H62
H2'2 H63
HN21 H64