Atom Nomenclature for 0QJ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0QJ

Atom Name (V3) Atom Name (V2)
C2 C2
C4 C4
C5 C5
C6 C6
C8 C8
CBA CBA
CAZ CAZ
CBB CBB
CBC CBC
CAY CAY
CBD CBD
CBE CBE
CAX CAX
CAW CAW
CAV CAV
NAU NAU
CAT CAT
OBF OBF
NAS NAS
CAR CAR
CAQ CAQ
CAP CAP
NAN NAN
CAO CAO
CAM CAM
CAL CAL
OBG OBG
CAJ CAJ
OAK OAK
CAH CAH
OAI OAI
CAG CAG
N9 N9
N7 N7
N3 N3
N1 N1
N6 N6
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37