Atom Nomenclature for 0PJ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0PJ

Atom Name (V3) Atom Name (V2)
C1 C1
O1 O1
O2 O2
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
N N1
C C9
P P1
O11 O3
O21 O4
N1 N2
CA C10
C9 C11
O O5
CB C12
CG C13
CD1 C14
CD2 C15
N2 N3
CA1 C16
CC C17
O3 O7
CB1 C18
CG1 C19
CD11 C20
CD21 C21
OXT O8
H21 H2
H22 H3
H41 H4
H51 H5
H61 H6
H71 H7
H81 H8
HN2 H10
H1 H11
H2 H12
HO2 H14
H H15
HA H17
HB2 H18
HB3 H19
HG H20
HD11 H21
HD12 H22
HD13 H23
HD21 H24
HD22 H25
HD23 H26
H3 H28
HA1 H30
HB21 H31
HB31 H32
HG1 H33
HD14 H34
HD15 H35
HD16 H36
HD24 H37
HD25 H38
HD26 H39
HXT H40