Atom Nomenclature for 0P8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0P8

Atom Name (V3) Atom Name (V2)
CAA CAA
OAS OAS
CAX CAX
CAU CAU
BR1 BR1
CAI CAI
CAT CAT
BR2 BR2
CAJ CAJ
CAW CAW
CAO CAO
NAP NAP
CAM CAM
CAL CAL
CAN CAN
NAQ NAQ
CAV CAV
CAK CAK
CAY CAY
OAB OAB
CBA CBA
CAH CAH
CAF CAF
CAE CAE
CAG CAG
CAZ CAZ
NAR NAR
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H19 H19
H20 H20
H21 H21
H22 H22
H9 H9