Atom Nomenclature for 0O6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0O6

Atom Name (V3) Atom Name (V2)
C C
N N
O O
CA CA
CB CB
CAA CAA
CAB CAB
CAC CAC
CAD CAD
OAF OAF
OAG OAG
OAH OAH
OAI OAI
OAJ OAJ
OAK OAK
OAL OAL
CAM CAM
CAN CAN
CAO CAO
CAP CAP
CAQ CAQ
CAR CAR
CAS CAS
CAT CAT
CAU CAU
CAV CAV
CAW CAW
CAX CAX
CAY CAY
CAZ CAZ
CBA CBA
CBB CBB
CBD CBD
CBE CBE
CBF CBF
CBG CBG
CBH CBH
CBI CBI
CBJ CBJ
CBK CBK
CBL CBL
CBM CBM
CBN CBN
CBO CBO
CBP CBP
CBQ CBQ
CBR CBR
CBS CBS
CBT CBT
CBU CBU
CBV CBV
NBW NBW
NBX NBX
NBY NBY
NBZ NBZ
NCB NCB
NCC NCC
NCD NCD
NCE NCE
NCF NCF
CCH CCH
CCI CCI
CCJ CCJ
CCK CCK
CCL CCL
CCM CCM
CCN CCN
CCO CCO
CCP CCP
CCQ CCQ
CCR CCR
CCS CCS
CCT CCT
CCV CCV
CCW CCW
CCX CCX
CCY CCY
CCZ CCZ
CDA CDA
CDB CDB
CDC CDC
CDD CDD
NDE NDE
NDF NDF
NDG NDG
NDH NDH
HN HN
HA HA
HB HB
HBA HBA
HAA HAA
HAAA HAAA
HAAB HAAB
HAB HAB
HABA HABA
HABB HABB
HAC HAC
HACA HACA
HACB HACB
HAD HAD
HADA HADA
HADB HADB
HOAK HOAK
HOAL HOAL
HAM HAM
HAN HAN
HAO HAO
HAP HAP
HAQ HAQ
HAR HAR
HAS HAS
HAT HAT
HAU HAU
HAV HAV
HAW HAW
HAX HAX
HAY HAY
HAZ HAZ
HBAA HBAA
HBB HBB
HBD HBD
HBDA HBDA
HBE HBE
HBEA HBEA
HBF HBF
HBFA HBFA
HBG HBG
HBGA HBGA
HBH HBH
HBHA HBHA
HBI HBI
HBIA HBIA
HBJ HBJ
HBJA HBJA
HBK HBK
HBKA HBKA
HBL HBL
HBLA HBLA
HBM HBM
HBMA HBMA
HBN HBN
HBNA HBNA
HBO HBO
HBOA HBOA
HBP HBP
HBPA HBPA
HBQ HBQ
HBQA HBQA
HBR HBR
HBRA HBRA
HBS HBS
HBSA HBSA
HBT HBT
HBTA HBTA
HBU HBU
HBUA HBUA
HBV HBV
HBVA HBVA
HNCB HNCB
HNCC HNCC
HNCD HNCD
HNCE HNCE
HNCF HNCF
HCS HCS
HCT HCT
HCV HCV
HCW HCW
HCX HCX
HCY HCY
HCZ HCZ
HDA HDA
HDB HDB
HDC HDC
HDD HDD