PDB Chemical Component 0O4
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0O4
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C25 |
C24 |
1.381 |
1.393 |
| C25 |
C26 |
1.388 |
1.363 |
| C24 |
C23 |
1.382 |
1.363 |
| C26 |
C27 |
1.400 |
1.401 |
| C23 |
C22 |
1.388 |
1.401 |
| C27 |
C22 |
1.397 |
1.418 |
| C27 |
C18 |
1.408 |
1.414 |
| C22 |
C21 |
1.387 |
1.407 |
| C13 |
C14 |
1.401 |
1.377 |
| C13 |
C12 |
1.400 |
1.397 |
| C14 |
C15 |
1.392 |
1.397 |
| C4 |
N3 |
1.463 |
1.464 |
| C4 |
C5 |
1.526 |
1.530 |
| C15 |
C18 |
1.393 |
1.480 |
| C15 |
C16 |
1.403 |
1.396 |
| N3 |
C2 |
1.338 |
1.348 |
| C2 |
O1 |
1.218 |
1.215 |
| C2 |
C12 |
1.511 |
1.478 |
| C12 |
C17 |
1.392 |
1.396 |
| C18 |
N19 |
1.362 |
1.321 |
| C17 |
C16 |
1.392 |
1.377 |
| C21 |
C20 |
1.386 |
1.364 |
| C7 |
C8 |
1.529 |
1.530 |
| C7 |
N6 |
1.473 |
1.471 |
| N19 |
C20 |
1.347 |
1.323 |
| C5 |
N6 |
1.477 |
1.469 |
| C8 |
O9 |
1.432 |
1.431 |
| N6 |
C11 |
1.476 |
1.469 |
| O9 |
C10 |
1.428 |
1.430 |
| C11 |
C10 |
1.526 |
1.531 |
| N3 |
H1 |
1.000 |
0.971 |
| C4 |
H2 |
1.100 |
1.090 |
| C4 |
H3 |
1.100 |
1.089 |
| C5 |
H4 |
1.100 |
1.090 |
| C5 |
H5 |
1.100 |
1.089 |
| C11 |
H7 |
1.100 |
1.090 |
| C11 |
H8 |
1.100 |
1.090 |
| C10 |
H9 |
1.100 |
1.090 |
| C10 |
H10 |
1.100 |
1.090 |
| C8 |
H11 |
1.100 |
1.090 |
| C8 |
H12 |
1.100 |
1.090 |
| C7 |
H13 |
1.100 |
1.091 |
| C7 |
H14 |
1.100 |
1.090 |
| C13 |
H15 |
1.080 |
1.080 |
| C17 |
H16 |
1.080 |
1.081 |
| C16 |
H17 |
1.080 |
1.080 |
| C14 |
H18 |
1.080 |
1.079 |
| C20 |
H19 |
1.080 |
1.080 |
| C26 |
H20 |
1.080 |
1.080 |
| C25 |
H21 |
1.080 |
1.080 |
| C21 |
H22 |
1.080 |
1.081 |
| C23 |
H23 |
1.080 |
1.080 |
| C24 |
H24 |
1.080 |
1.080 |
Bond Angles for 0O4
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C25 |
C24 |
C23 |
119.9 |
120.9 |
| C24 |
C25 |
H21 |
119.8 |
119.5 |
| C25 |
C24 |
H24 |
120.0 |
119.5 |
| C25 |
C26 |
H20 |
119.8 |
120.3 |
| C24 |
C23 |
H23 |
119.9 |
120.3 |
| C26 |
C27 |
C22 |
118.4 |
119.4 |
| C27 |
C22 |
C21 |
120.4 |
118.2 |
| C22 |
C21 |
H22 |
120.3 |
120.5 |
| C13 |
C14 |
C15 |
120.2 |
120.0 |
| C14 |
C13 |
H15 |
119.3 |
120.0 |
| C13 |
C14 |
H18 |
119.9 |
120.0 |
| C13 |
C12 |
C17 |
118.3 |
120.0 |
| C14 |
C15 |
C18 |
122.9 |
120.0 |
| C4 |
N3 |
H1 |
116.6 |
120.0 |
| C4 |
C5 |
N6 |
111.9 |
109.5 |
| C5 |
C4 |
H2 |
109.9 |
109.4 |
| C5 |
C4 |
H3 |
109.9 |
109.5 |
| C4 |
C5 |
H4 |
108.9 |
109.4 |
| C4 |
C5 |
H5 |
108.8 |
109.5 |
| C15 |
C18 |
N19 |
116.5 |
120.2 |
| C15 |
C16 |
H17 |
119.2 |
120.0 |
| N3 |
C2 |
C12 |
120.6 |
120.0 |
| C2 |
C12 |
C17 |
120.5 |
120.0 |
| C12 |
C17 |
C16 |
120.3 |
120.0 |
| C12 |
C17 |
H16 |
119.8 |
120.0 |
| C18 |
N19 |
C20 |
122.5 |
122.7 |
| C16 |
C17 |
H16 |
119.8 |
120.0 |
| C17 |
C16 |
H17 |
119.2 |
120.0 |
| C21 |
C20 |
H19 |
120.0 |
119.0 |
| C7 |
C8 |
H11 |
109.2 |
109.5 |
| C7 |
C8 |
H12 |
109.2 |
109.6 |
| N19 |
C20 |
H19 |
120.0 |
119.0 |
| C5 |
N6 |
C11 |
108.2 |
111.0 |
| N6 |
C5 |
H4 |
108.8 |
109.4 |
| N6 |
C5 |
H5 |
108.9 |
109.5 |
| N6 |
C11 |
C10 |
110.9 |
109.3 |
| N6 |
C11 |
H7 |
109.1 |
109.5 |
| N6 |
C11 |
H8 |
109.1 |
109.5 |
| O9 |
C10 |
H9 |
109.4 |
109.5 |
| O9 |
C10 |
H10 |
109.4 |
109.6 |
| C10 |
C11 |
H7 |
109.1 |
109.5 |
| C10 |
C11 |
H8 |
109.1 |
109.5 |
| C11 |
C10 |
H9 |
109.5 |
109.5 |
| C11 |
C10 |
H10 |
109.5 |
109.5 |
| H2 |
C4 |
H3 |
109.5 |
109.4 |
| H4 |
C5 |
H5 |
109.5 |
109.4 |
| H7 |
C11 |
H8 |
109.5 |
109.5 |
| H9 |
C10 |
H10 |
109.5 |
109.5 |
| H11 |
C8 |
H12 |
109.5 |
109.5 |
| H13 |
C7 |
H14 |
109.4 |
109.5 |
Torsion Angles for 0O4
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C24 |
C25 |
C26 |
H20 |
180.3 |
180.0 |
| C25 |
C24 |
C23 |
H23 |
180.0 |
180.1 |
| C25 |
C26 |
C27 |
C22 |
358.8 |
360.0 |
| C23 |
C24 |
C25 |
H21 |
180.3 |
179.9 |
| C25 |
C24 |
C23 |
H24 |
180.0 |
180.0 |
| C26 |
C27 |
C22 |
C21 |
180.5 |
180.0 |
| C25 |
C24 |
C23 |
C22 |
0.0 |
0.1 |
| C23 |
C22 |
C21 |
H22 |
359.7 |
0.0 |
| C27 |
C22 |
C21 |
H22 |
180.6 |
180.0 |
| C22 |
C21 |
C20 |
H19 |
179.7 |
179.7 |
| C14 |
C13 |
C12 |
C17 |
0.4 |
0.2 |
| C13 |
C14 |
C15 |
C18 |
177.0 |
180.0 |
| C2 |
C12 |
C13 |
C17 |
179.5 |
179.8 |
| C13 |
C12 |
C17 |
C16 |
359.5 |
359.8 |
| C13 |
C12 |
C17 |
H16 |
179.5 |
179.7 |
| C15 |
C14 |
C13 |
H15 |
177.9 |
180.0 |
| C13 |
C14 |
C15 |
H18 |
180.0 |
180.0 |
| C14 |
C15 |
C18 |
N19 |
314.2 |
44.7 |
| C14 |
C15 |
C16 |
H17 |
176.1 |
180.3 |
| C4 |
N3 |
C2 |
C12 |
179.6 |
180.4 |
| C5 |
C4 |
N3 |
H1 |
283.4 |
0.1 |
| C4 |
C5 |
N6 |
C11 |
172.7 |
170.0 |
| N6 |
C5 |
C4 |
H4 |
239.6 |
240.0 |
| N6 |
C5 |
C4 |
H5 |
120.4 |
120.1 |
| H2 |
C4 |
C5 |
H3 |
120.6 |
120.0 |
| H4 |
C5 |
C4 |
H5 |
240.7 |
240.0 |
| C18 |
C15 |
C16 |
H17 |
2.5 |
360.0 |
| C15 |
C18 |
N19 |
C20 |
183.1 |
180.0 |
| C13 |
C14 |
C15 |
C16 |
3.7 |
359.7 |
| C15 |
C16 |
C17 |
H16 |
182.4 |
180.0 |
| C17 |
C16 |
C15 |
H17 |
180.0 |
180.0 |
| N3 |
C2 |
C12 |
C17 |
3.9 |
179.8 |
| C13 |
C12 |
C2 |
C17 |
180.5 |
180.2 |
| C2 |
C12 |
C17 |
C16 |
180.0 |
180.0 |
| C2 |
C12 |
C17 |
H16 |
360.0 |
359.9 |
| C16 |
C17 |
C12 |
H16 |
180.0 |
180.1 |
| C12 |
C17 |
C16 |
H17 |
182.3 |
180.0 |
| C18 |
N19 |
C20 |
H19 |
180.6 |
180.0 |
| C15 |
C16 |
C17 |
H17 |
180.0 |
180.0 |
| C12 |
C17 |
C16 |
H16 |
180.0 |
179.9 |
| N19 |
C20 |
C21 |
H19 |
180.0 |
180.1 |
| H11 |
C8 |
C7 |
H12 |
240.3 |
120.1 |
| C7 |
N6 |
C5 |
H4 |
173.1 |
173.7 |
| C7 |
N6 |
C5 |
H5 |
53.8 |
53.7 |
| C7 |
N6 |
C11 |
H7 |
176.8 |
178.5 |
| C7 |
N6 |
C11 |
H8 |
296.3 |
298.6 |
| C21 |
C20 |
N19 |
H19 |
180.0 |
179.9 |
| N6 |
C5 |
C4 |
H2 |
96.8 |
60.0 |
| N6 |
C5 |
C4 |
H3 |
336.2 |
300.1 |
| C4 |
C5 |
N6 |
H4 |
120.4 |
119.9 |
| C4 |
C5 |
N6 |
H5 |
239.6 |
239.9 |
| C5 |
N6 |
C11 |
C10 |
178.4 |
182.4 |
| C5 |
N6 |
C11 |
H7 |
298.7 |
302.3 |
| C5 |
N6 |
C11 |
H8 |
58.2 |
62.4 |
| H4 |
C5 |
N6 |
H5 |
119.3 |
120.0 |
| C8 |
O9 |
C10 |
H9 |
179.0 |
298.7 |
| C8 |
O9 |
C10 |
H10 |
298.9 |
178.6 |
| C11 |
N6 |
C5 |
H4 |
52.3 |
50.0 |
| C11 |
N6 |
C5 |
H5 |
293.0 |
290.1 |
| C10 |
C11 |
N6 |
H7 |
239.8 |
240.1 |
| C10 |
C11 |
N6 |
H8 |
120.2 |
120.0 |
| N6 |
C11 |
C10 |
H9 |
182.4 |
63.1 |
| N6 |
C11 |
C10 |
H10 |
62.4 |
183.1 |
| H7 |
C11 |
N6 |
H8 |
240.5 |
239.9 |
| O9 |
C10 |
C11 |
H7 |
182.2 |
183.2 |
| O9 |
C10 |
C11 |
H8 |
62.6 |
63.1 |
| C11 |
C10 |
O9 |
H9 |
240.0 |
119.9 |
| C11 |
C10 |
O9 |
H10 |
120.0 |
240.0 |
| H9 |
C10 |
O9 |
H10 |
240.1 |
120.1 |
| N6 |
C11 |
C10 |
H7 |
120.2 |
119.9 |
| N6 |
C11 |
C10 |
H8 |
239.8 |
240.0 |
| O9 |
C10 |
C11 |
H9 |
120.0 |
240.1 |
| O9 |
C10 |
C11 |
H10 |
240.0 |
120.0 |
| H7 |
C11 |
C10 |
H8 |
119.6 |
120.1 |
| H9 |
C10 |
C11 |
H10 |
120.0 |
239.9 |
| H1 |
N3 |
C2 |
C12 |
359.6 |
0.3 |
| H2 |
C4 |
N3 |
H1 |
43.1 |
120.0 |
| H2 |
C4 |
C5 |
N6 |
96.8 |
60.0 |
| C5 |
C4 |
H2 |
H3 |
239.1 |
240.0 |
| H2 |
C4 |
C5 |
H4 |
217.2 |
180.0 |
| H2 |
C4 |
C5 |
H5 |
336.4 |
300.0 |
| H3 |
C4 |
N3 |
H1 |
163.7 |
240.0 |
| H3 |
C4 |
C5 |
N6 |
336.2 |
300.1 |
| C5 |
C4 |
H3 |
H2 |
120.9 |
119.9 |
| H3 |
C4 |
C5 |
H4 |
96.5 |
60.0 |
| H3 |
C4 |
C5 |
H5 |
215.8 |
180.0 |
| C4 |
C5 |
H4 |
N6 |
237.7 |
240.0 |
| H4 |
C5 |
C4 |
H2 |
217.2 |
180.0 |
| H4 |
C5 |
C4 |
H3 |
96.5 |
60.0 |
| C4 |
C5 |
H4 |
H5 |
118.9 |
120.0 |
| H4 |
C5 |
N6 |
C11 |
52.3 |
50.0 |
| N6 |
C5 |
H4 |
H5 |
241.1 |
240.0 |
| C4 |
C5 |
H5 |
N6 |
122.2 |
120.1 |
| H5 |
C5 |
C4 |
H2 |
336.4 |
300.0 |
| H5 |
C5 |
C4 |
H3 |
215.8 |
180.0 |
| C4 |
C5 |
H5 |
H4 |
241.1 |
240.1 |
| H5 |
C5 |
N6 |
C11 |
293.0 |
290.1 |
| N6 |
C5 |
H5 |
H4 |
118.9 |
120.0 |
| N6 |
C11 |
H7 |
C10 |
238.6 |
240.2 |
| N6 |
C11 |
H7 |
H8 |
119.3 |
120.1 |
| C10 |
C11 |
H7 |
H8 |
240.7 |
239.9 |
| H7 |
C11 |
C10 |
H9 |
62.2 |
303.1 |
| H7 |
C11 |
C10 |
H10 |
302.2 |
63.2 |
| N6 |
C11 |
H8 |
C10 |
121.3 |
119.8 |
| N6 |
C11 |
H8 |
H7 |
240.7 |
239.9 |
| C10 |
C11 |
H8 |
H7 |
119.3 |
120.1 |
| H8 |
C11 |
C10 |
H9 |
302.6 |
183.0 |
| H8 |
C11 |
C10 |
H10 |
182.7 |
303.1 |
| O9 |
C10 |
H9 |
H10 |
119.9 |
239.8 |
| H9 |
C10 |
C11 |
H7 |
62.2 |
303.1 |
| H9 |
C10 |
C11 |
H8 |
302.6 |
183.0 |
| C11 |
C10 |
H9 |
H10 |
240.0 |
120.1 |
| O9 |
C10 |
H10 |
H9 |
240.1 |
120.1 |
| H10 |
C10 |
C11 |
H7 |
302.2 |
63.2 |
| H10 |
C10 |
C11 |
H8 |
182.7 |
303.1 |
| C11 |
C10 |
H10 |
H9 |
120.0 |
240.0 |
| C7 |
C8 |
H11 |
H12 |
119.5 |
239.8 |
| C7 |
C8 |
H12 |
H11 |
240.5 |
120.1 |
| H13 |
C7 |
C8 |
H11 |
297.0 |
177.0 |
| H13 |
C7 |
C8 |
H12 |
56.7 |
56.9 |
| H14 |
C7 |
C8 |
H11 |
56.8 |
56.8 |
| H14 |
C7 |
C8 |
H12 |
176.5 |
296.7 |
| H15 |
C13 |
C14 |
C15 |
177.9 |
180.0 |
| H15 |
C13 |
C14 |
H18 |
357.9 |
360.0 |
| H15 |
C13 |
C12 |
C17 |
180.4 |
180.3 |
| C12 |
C17 |
H16 |
C16 |
180.0 |
180.1 |
| H16 |
C17 |
C16 |
H17 |
2.3 |
0.1 |
| H17 |
C16 |
C17 |
H16 |
2.3 |
0.1 |
| C13 |
C14 |
H18 |
C15 |
180.0 |
180.0 |
| H18 |
C14 |
C13 |
H15 |
357.9 |
360.0 |
| H18 |
C14 |
C15 |
C18 |
357.0 |
360.0 |
| H20 |
C26 |
C27 |
C22 |
178.9 |
180.0 |
| H21 |
C25 |
C24 |
C23 |
180.3 |
179.9 |
| H21 |
C25 |
C24 |
H24 |
0.3 |
359.9 |
| H21 |
C25 |
C26 |
H20 |
0.3 |
0.0 |
| H22 |
C21 |
C20 |
H19 |
359.7 |
359.9 |
| C25 |
C24 |
H24 |
C23 |
180.0 |
180.0 |
| H24 |
C24 |
C25 |
H21 |
0.3 |
359.9 |
| H24 |
C24 |
C23 |
H23 |
360.0 |
0.1 |