PDB Chemical Component 0O2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0O2
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O1G |
PG |
1.510 |
1.480 |
O2A |
PA |
1.505 |
1.481 |
PG |
O3B |
1.604 |
1.610 |
PG |
O2G |
1.517 |
1.610 |
PG |
O3G |
1.513 |
1.610 |
O3B |
PB |
1.586 |
1.610 |
O3A |
PA |
1.586 |
1.610 |
O3A |
PB |
1.579 |
1.609 |
O2B |
PB |
1.509 |
1.480 |
O1A |
PA |
1.503 |
1.610 |
PA |
O5' |
1.587 |
1.610 |
PB |
O1B |
1.510 |
1.610 |
O5' |
C5' |
1.408 |
1.429 |
C5' |
C4' |
1.482 |
1.530 |
C4' |
O4' |
1.500 |
1.437 |
C4' |
C3' |
1.478 |
1.541 |
O4' |
C1' |
1.486 |
1.444 |
O2C |
PC |
1.500 |
1.479 |
C8 |
N7 |
1.344 |
1.301 |
C8 |
N9 |
1.343 |
1.366 |
C3' |
C2' |
1.468 |
1.548 |
C3' |
O3' |
1.458 |
1.429 |
N7 |
C5 |
1.344 |
1.355 |
C1' |
N9 |
1.407 |
1.465 |
C1' |
C2' |
1.485 |
1.550 |
N9 |
C4 |
1.359 |
1.369 |
C2' |
O2' |
1.460 |
1.430 |
O2D |
PD |
1.525 |
1.480 |
C5 |
C4 |
1.405 |
1.399 |
C5 |
C6 |
1.395 |
1.414 |
PC |
O3' |
1.603 |
1.610 |
PC |
O3C |
1.596 |
1.610 |
PC |
O1C |
1.480 |
1.611 |
C4 |
N3 |
1.351 |
1.338 |
O6 |
C6 |
1.230 |
1.219 |
C6 |
N1 |
1.338 |
1.352 |
O1D |
PD |
1.482 |
1.610 |
O3C |
PD |
1.595 |
1.610 |
N3 |
C2 |
1.346 |
1.315 |
PD |
O3D |
1.502 |
1.610 |
N1 |
C2 |
1.337 |
1.362 |
C2 |
N2 |
1.408 |
1.372 |
O1D |
H1 |
0.950 |
0.967 |
O3D |
H2 |
0.950 |
0.967 |
O2G |
H3 |
0.950 |
0.967 |
O3G |
H4 |
0.950 |
0.968 |
O1B |
H5 |
0.950 |
0.967 |
O1A |
H6 |
0.950 |
0.967 |
C5' |
H7 |
1.100 |
1.090 |
C5' |
H8 |
1.100 |
1.090 |
C4' |
H9 |
1.100 |
1.090 |
C3' |
H10 |
1.100 |
1.089 |
C2' |
H11 |
1.100 |
1.090 |
O2' |
H12 |
0.950 |
0.967 |
C1' |
H13 |
1.100 |
1.090 |
C8 |
H14 |
1.080 |
1.080 |
N2 |
H15 |
1.000 |
0.970 |
N2 |
H16 |
1.000 |
0.970 |
O1C |
H18 |
0.950 |
0.966 |
N1 |
H19 |
1.000 |
0.970 |
Bond Angles for 0O2
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1G |
PG |
O3B |
109.4 |
109.5 |
O1G |
PG |
O2G |
108.9 |
109.5 |
O1G |
PG |
O3G |
109.5 |
109.5 |
O2A |
PA |
O5' |
110.8 |
109.5 |
O2G |
PG |
O3B |
108.1 |
109.5 |
O3G |
PG |
O3B |
111.5 |
109.5 |
PG |
O3B |
PB |
123.4 |
134.0 |
O2G |
PG |
O3G |
109.6 |
109.5 |
PG |
O2G |
H3 |
109.5 |
114.0 |
PG |
O3G |
H4 |
109.5 |
114.0 |
O3A |
PA |
O5' |
110.9 |
109.5 |
O1A |
PA |
O5' |
109.1 |
109.5 |
PA |
O5' |
C5' |
117.1 |
123.0 |
PB |
O1B |
H5 |
109.5 |
114.0 |
O5' |
C5' |
C4' |
111.5 |
109.5 |
O5' |
C5' |
H7 |
109.0 |
109.5 |
O5' |
C5' |
H8 |
108.9 |
109.5 |
C5' |
C4' |
O4' |
109.7 |
109.8 |
C5' |
C4' |
C3' |
113.7 |
109.9 |
C4' |
C5' |
H7 |
108.9 |
109.5 |
C4' |
C5' |
H8 |
109.0 |
109.4 |
C5' |
C4' |
H9 |
108.7 |
109.9 |
O4' |
C4' |
C3' |
107.3 |
107.3 |
C4' |
O4' |
C1' |
104.6 |
106.9 |
O4' |
C4' |
H9 |
108.5 |
109.8 |
C4' |
C3' |
C2' |
105.9 |
104.2 |
C4' |
C3' |
O3' |
105.3 |
110.4 |
C3' |
C4' |
H9 |
108.8 |
110.0 |
C4' |
C3' |
H10 |
110.8 |
110.5 |
O4' |
C1' |
N9 |
109.7 |
110.6 |
O4' |
C1' |
C2' |
103.4 |
103.5 |
O4' |
C1' |
H13 |
109.1 |
110.6 |
O2C |
PC |
O3C |
110.7 |
109.5 |
C8 |
N7 |
C5 |
107.6 |
109.4 |
N7 |
C8 |
H14 |
124.2 |
125.2 |
C8 |
N9 |
C4 |
105.7 |
107.4 |
O3' |
C3' |
C2' |
112.4 |
110.5 |
C3' |
C2' |
O2' |
114.4 |
110.9 |
C2' |
C3' |
H10 |
111.0 |
110.5 |
C3' |
C2' |
H11 |
108.5 |
110.9 |
O3' |
C3' |
H10 |
111.1 |
110.6 |
N7 |
C5 |
C4 |
106.7 |
107.3 |
N7 |
C5 |
C6 |
135.6 |
134.1 |
C1' |
N9 |
C4 |
126.1 |
126.3 |
N9 |
C1' |
H13 |
110.2 |
110.5 |
C1' |
C2' |
H11 |
108.3 |
110.9 |
N9 |
C4 |
C5 |
108.5 |
106.1 |
N9 |
C4 |
N3 |
130.7 |
134.2 |
O2' |
C2' |
H11 |
108.6 |
110.8 |
C2' |
O2' |
H12 |
109.5 |
114.0 |
O2D |
PD |
O3D |
109.8 |
109.5 |
C6 |
C5 |
C4 |
117.8 |
118.6 |
C5 |
C4 |
N3 |
120.8 |
119.7 |
C5 |
C6 |
N1 |
118.8 |
118.3 |
O1C |
PC |
O3C |
111.2 |
109.4 |
PC |
O1C |
H18 |
109.5 |
114.0 |
O6 |
C6 |
N1 |
118.4 |
120.8 |
C6 |
N1 |
C2 |
122.4 |
120.4 |
C6 |
N1 |
H19 |
118.8 |
119.8 |
O1D |
PD |
O3D |
113.0 |
109.5 |
PD |
O3D |
H2 |
109.5 |
114.0 |
N1 |
C2 |
N2 |
121.7 |
119.1 |
C2 |
N1 |
H19 |
118.8 |
119.8 |
C2 |
N2 |
H15 |
120.0 |
120.0 |
C2 |
N2 |
H16 |
120.0 |
120.0 |
H7 |
C5' |
H8 |
109.5 |
109.5 |
H15 |
N2 |
H16 |
120.0 |
120.0 |
Torsion Angles for 0O2
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2G |
PG |
O1G |
O3B |
117.9 |
120.0 |
O3G |
PG |
O1G |
O3B |
237.6 |
240.0 |
O1G |
PG |
O3B |
PB |
249.3 |
45.0 |
O2G |
PG |
O1G |
O3G |
240.2 |
240.0 |
O1G |
PG |
O2G |
H3 |
0.0 |
180.0 |
O1G |
PG |
O3G |
H4 |
0.0 |
300.0 |
O3A |
PA |
O2A |
O5' |
244.0 |
240.0 |
O1A |
PA |
O2A |
O5' |
122.8 |
120.0 |
O2A |
PA |
O5' |
C5' |
299.0 |
55.0 |
O1G |
PG |
O3B |
O2G |
118.4 |
120.0 |
O1G |
PG |
O3B |
O3G |
238.8 |
240.0 |
O2G |
PG |
O3B |
O3G |
120.5 |
120.0 |
O3B |
PG |
O2G |
H3 |
118.7 |
300.0 |
O3B |
PG |
O3G |
H4 |
238.9 |
180.0 |
O1G |
PG |
O2G |
O3B |
241.3 |
240.0 |
O1G |
PG |
O2G |
O3G |
119.7 |
120.0 |
O3G |
PG |
O2G |
O3B |
121.6 |
120.0 |
O2G |
PG |
O3B |
PB |
130.9 |
285.0 |
O2G |
PG |
O3G |
H4 |
119.4 |
60.0 |
O1G |
PG |
O3G |
O3B |
121.1 |
120.0 |
O1G |
PG |
O3G |
O2G |
240.7 |
240.0 |
O2G |
PG |
O3G |
O3B |
240.4 |
240.0 |
O3G |
PG |
O3B |
PB |
10.4 |
165.0 |
O3G |
PG |
O2G |
H3 |
240.3 |
60.0 |
O3B |
PB |
O1B |
H5 |
236.3 |
60.1 |
O2A |
PA |
O3A |
O5' |
115.9 |
120.0 |
O1A |
PA |
O3A |
O5' |
235.9 |
239.9 |
O3A |
PA |
O5' |
C5' |
46.7 |
175.0 |
O3A |
PB |
O1B |
H5 |
123.1 |
300.0 |
PG |
O3B |
PB |
O2B |
171.9 |
320.0 |
O2B |
PB |
O1B |
H5 |
0.0 |
180.0 |
O2A |
PA |
O1A |
O5' |
236.2 |
240.0 |
O3A |
PA |
O1A |
O5' |
125.1 |
120.1 |
O1A |
PA |
O5' |
C5' |
173.9 |
295.0 |
PA |
O5' |
C5' |
C4' |
182.6 |
179.9 |
PA |
O5' |
C5' |
H7 |
302.9 |
300.0 |
PA |
O5' |
C5' |
H8 |
62.3 |
60.0 |
PG |
O3B |
PB |
O1B |
297.7 |
80.0 |
O5' |
C5' |
C4' |
O4' |
299.7 |
66.4 |
O5' |
C5' |
C4' |
C3' |
59.8 |
184.3 |
C4' |
C5' |
O5' |
H7 |
239.7 |
240.0 |
C4' |
C5' |
O5' |
H8 |
120.3 |
120.0 |
O5' |
C5' |
C4' |
H9 |
181.2 |
305.5 |
H7 |
C5' |
O5' |
H8 |
240.6 |
240.0 |
O5' |
C5' |
C4' |
H7 |
120.3 |
120.0 |
O5' |
C5' |
C4' |
H8 |
239.7 |
240.0 |
O4' |
C4' |
C5' |
C3' |
239.8 |
242.2 |
C5' |
C4' |
O4' |
C1' |
140.1 |
145.9 |
O4' |
C4' |
C5' |
H9 |
118.5 |
120.9 |
C5' |
C4' |
C3' |
C2' |
245.2 |
238.6 |
C5' |
C4' |
C3' |
O3' |
126.0 |
119.9 |
C3' |
C4' |
C5' |
H9 |
238.7 |
238.8 |
C5' |
C4' |
C3' |
H10 |
5.7 |
357.2 |
H7 |
C5' |
C4' |
H8 |
119.4 |
120.0 |
C5' |
C4' |
O4' |
C3' |
124.0 |
119.4 |
O4' |
C4' |
C5' |
H7 |
179.3 |
306.4 |
O4' |
C4' |
C5' |
H8 |
59.9 |
186.4 |
C5' |
C4' |
O4' |
H9 |
241.4 |
239.0 |
O4' |
C4' |
C3' |
C2' |
6.7 |
357.9 |
O4' |
C4' |
C3' |
O3' |
247.5 |
239.3 |
C3' |
C4' |
O4' |
H9 |
117.4 |
119.6 |
O4' |
C4' |
C3' |
H10 |
127.2 |
116.6 |
C4' |
O4' |
C1' |
N9 |
204.7 |
201.4 |
C4' |
O4' |
C1' |
C2' |
327.7 |
319.9 |
C4' |
O4' |
C1' |
H13 |
83.8 |
78.6 |
C5' |
C4' |
C3' |
O4' |
238.5 |
240.6 |
C3' |
C4' |
C5' |
H7 |
299.5 |
64.2 |
C3' |
C4' |
C5' |
H8 |
180.1 |
304.3 |
C5' |
C4' |
C3' |
H9 |
121.3 |
121.2 |
C3' |
C4' |
O4' |
C1' |
16.1 |
26.5 |
O4' |
C4' |
C3' |
H9 |
242.8 |
240.5 |
O3' |
C3' |
C4' |
C2' |
240.7 |
241.3 |
C4' |
C3' |
C2' |
O2' |
210.0 |
221.0 |
C2' |
C3' |
C4' |
H10 |
239.6 |
241.3 |
C4' |
C3' |
C2' |
H11 |
88.6 |
97.4 |
O3' |
C3' |
C4' |
H10 |
120.3 |
122.7 |
C1' |
O4' |
C4' |
C3' |
16.1 |
26.5 |
C1' |
O4' |
C4' |
H9 |
258.7 |
266.9 |
O4' |
C1' |
N9 |
C4 |
255.2 |
203.5 |
N9 |
C1' |
O4' |
H13 |
120.9 |
122.8 |
O4' |
C1' |
C2' |
H11 |
281.3 |
278.8 |
O1C |
PC |
O2C |
O3C |
126.4 |
120.0 |
O2C |
PC |
O1C |
H18 |
360.0 |
180.0 |
N7 |
C8 |
N9 |
C4 |
358.5 |
0.3 |
C8 |
N7 |
C5 |
C4 |
359.2 |
359.7 |
C8 |
N7 |
C5 |
C6 |
179.3 |
180.0 |
C1' |
N9 |
C8 |
C4 |
181.2 |
179.7 |
C8 |
N9 |
C1' |
H13 |
194.1 |
146.8 |
C8 |
N9 |
C4 |
C5 |
0.9 |
359.6 |
C8 |
N9 |
C4 |
N3 |
181.0 |
180.5 |
C4' |
C3' |
C2' |
O3' |
245.5 |
241.4 |
C2' |
C3' |
C4' |
H9 |
123.9 |
117.4 |
C4' |
C3' |
C2' |
H10 |
120.3 |
118.7 |
O4' |
C1' |
C2' |
C3' |
37.2 |
37.0 |
O3' |
C3' |
C2' |
H10 |
234.8 |
237.3 |
C1' |
C2' |
C3' |
H11 |
244.2 |
241.8 |
O2' |
C2' |
C3' |
H11 |
121.5 |
123.6 |
C3' |
C2' |
O2' |
H12 |
180.0 |
180.0 |
C4' |
C3' |
O3' |
C2' |
114.8 |
114.7 |
O3' |
C3' |
C4' |
H9 |
4.7 |
358.8 |
C4' |
C3' |
O3' |
H10 |
239.9 |
237.4 |
O3' |
C3' |
C2' |
O2' |
324.6 |
339.6 |
C2' |
C3' |
O3' |
H10 |
125.1 |
122.6 |
O3' |
C3' |
C2' |
H11 |
203.1 |
216.0 |
C5 |
N7 |
C8 |
H14 |
181.4 |
180.0 |
N9 |
C4 |
C5 |
N7 |
359.9 |
0.4 |
C6 |
C5 |
N7 |
C4 |
180.1 |
180.3 |
N7 |
C5 |
C4 |
N3 |
179.9 |
179.6 |
N7 |
C5 |
C6 |
N1 |
180.5 |
180.0 |
O4' |
C1' |
N9 |
C2' |
116.0 |
114.1 |
O4' |
C1' |
N9 |
H13 |
239.8 |
237.2 |
C8 |
N9 |
C1' |
C4 |
178.6 |
180.4 |
N9 |
C1' |
C2' |
H11 |
40.8 |
37.3 |
C1' |
N9 |
C4 |
C5 |
179.8 |
179.9 |
C1' |
N9 |
C4 |
N3 |
359.8 |
0.9 |
O4' |
C1' |
C2' |
N9 |
240.5 |
241.5 |
O4' |
C1' |
C2' |
H13 |
116.1 |
118.6 |
C1' |
C2' |
C3' |
H10 |
212.5 |
220.5 |
C3' |
C2' |
C1' |
H11 |
115.9 |
118.2 |
O2' |
C2' |
C1' |
H11 |
240.5 |
236.4 |
C1' |
C2' |
O2' |
H12 |
60.6 |
67.3 |
N7 |
C5 |
C4 |
N9 |
359.9 |
0.4 |
C4 |
N9 |
C1' |
H13 |
15.5 |
326.4 |
C6 |
C5 |
C4 |
N9 |
179.8 |
180.2 |
C5 |
C4 |
N9 |
N3 |
180.0 |
179.0 |
O4' |
C1' |
C2' |
O2' |
161.8 |
155.2 |
O2' |
C2' |
C3' |
H10 |
89.7 |
102.3 |
C3' |
C2' |
O2' |
H11 |
238.6 |
236.3 |
C1' |
C2' |
O2' |
H11 |
119.3 |
123.6 |
O1D |
PD |
O2D |
O3D |
234.1 |
120.0 |
O2D |
PD |
O3D |
H2 |
0.0 |
180.0 |
N7 |
C5 |
C4 |
C6 |
180.0 |
180.2 |
N9 |
C4 |
C5 |
N3 |
180.0 |
180.8 |
C4 |
C5 |
C6 |
N1 |
0.5 |
0.3 |
N7 |
C5 |
C6 |
C4 |
179.9 |
179.7 |
N9 |
C4 |
C5 |
C6 |
179.8 |
180.2 |
C6 |
C5 |
C4 |
N3 |
359.8 |
359.4 |
O6 |
C6 |
C5 |
N1 |
180.5 |
180.0 |
C5 |
C6 |
N1 |
C2 |
359.6 |
0.0 |
C5 |
C6 |
N1 |
H19 |
179.6 |
180.0 |
PC |
O3' |
C3' |
H10 |
16.8 |
2.6 |
O3C |
PC |
O1C |
H18 |
126.1 |
300.0 |
O2C |
PC |
O1C |
O3C |
233.9 |
239.9 |
N9 |
C4 |
N3 |
C5 |
180.0 |
178.9 |
O6 |
C6 |
C5 |
C4 |
181.1 |
180.3 |
C5 |
C6 |
O6 |
N1 |
179.5 |
180.0 |
O6 |
C6 |
N1 |
C2 |
179.1 |
180.0 |
O6 |
C6 |
N1 |
H19 |
359.1 |
360.0 |
N1 |
C6 |
C5 |
C4 |
0.5 |
0.3 |
C6 |
N1 |
C2 |
N2 |
180.4 |
180.0 |
C2 |
N1 |
C6 |
H19 |
180.0 |
180.0 |
O2D |
PD |
O1D |
O3D |
124.1 |
240.0 |
O1D |
PD |
O3D |
H2 |
125.0 |
60.0 |
O3C |
PD |
O3D |
H2 |
240.4 |
300.0 |
N9 |
C4 |
N3 |
C2 |
179.7 |
179.5 |
C5 |
C4 |
N3 |
C2 |
359.7 |
0.6 |
N3 |
C2 |
N1 |
H19 |
179.9 |
180.0 |
N3 |
C2 |
N2 |
H15 |
0.0 |
180.0 |
N3 |
C2 |
N2 |
H16 |
180.0 |
0.1 |
C6 |
N1 |
C2 |
H19 |
180.0 |
180.0 |
N1 |
C2 |
N2 |
H15 |
179.5 |
359.9 |
N1 |
C2 |
N2 |
H16 |
359.5 |
180.0 |
N2 |
C2 |
N1 |
H19 |
0.4 |
0.0 |
H15 |
N2 |
C2 |
H16 |
180.0 |
179.9 |
H1 |
O1D |
PD |
O3D |
235.9 |
60.0 |
H3 |
O2G |
PG |
O3B |
118.7 |
300.0 |
H3 |
O2G |
PG |
O3G |
240.3 |
60.0 |
H4 |
O3G |
PG |
O3B |
238.9 |
180.0 |
H6 |
O1A |
PA |
O5' |
123.8 |
300.0 |
O5' |
C5' |
H7 |
C4' |
238.1 |
240.0 |
O5' |
C5' |
H7 |
H8 |
119.0 |
120.0 |
H7 |
C5' |
C4' |
O4' |
179.3 |
306.4 |
H7 |
C5' |
C4' |
C3' |
299.5 |
64.2 |
C4' |
C5' |
H7 |
H8 |
240.9 |
240.0 |
H7 |
C5' |
C4' |
H9 |
60.8 |
185.5 |
O5' |
C5' |
H8 |
C4' |
121.9 |
120.0 |
O5' |
C5' |
H8 |
H7 |
240.9 |
240.0 |
H8 |
C5' |
C4' |
O4' |
59.9 |
186.4 |
H8 |
C5' |
C4' |
C3' |
180.1 |
304.3 |
C4' |
C5' |
H8 |
H7 |
119.0 |
120.0 |
H8 |
C5' |
C4' |
H9 |
301.4 |
65.5 |
C5' |
C4' |
H9 |
O4' |
119.3 |
120.9 |
C5' |
C4' |
H9 |
C3' |
235.7 |
238.9 |
H9 |
C4' |
C5' |
H7 |
60.8 |
185.5 |
H9 |
C4' |
C5' |
H8 |
301.4 |
65.5 |
O4' |
C4' |
H9 |
C3' |
116.4 |
117.9 |
H9 |
C4' |
O4' |
C1' |
258.7 |
266.9 |
H9 |
C4' |
C3' |
C2' |
123.9 |
117.4 |
H9 |
C4' |
C3' |
O3' |
4.7 |
358.8 |
H9 |
C4' |
C3' |
H10 |
244.4 |
236.1 |
C4' |
C3' |
H10 |
C2' |
242.7 |
245.2 |
C4' |
C3' |
H10 |
O3' |
116.8 |
122.6 |
H10 |
C3' |
C4' |
H9 |
244.4 |
236.1 |
O3' |
C3' |
H10 |
C2' |
125.9 |
122.7 |
H10 |
C3' |
C2' |
O2' |
89.7 |
102.3 |
H10 |
C3' |
C2' |
H11 |
328.3 |
338.7 |
C3' |
C2' |
H11 |
O2' |
124.9 |
123.7 |
H11 |
C2' |
C3' |
H10 |
328.3 |
338.7 |
H11 |
C2' |
O2' |
H12 |
301.3 |
303.7 |
H12 |
O2' |
C2' |
H11 |
301.3 |
303.7 |
O4' |
C1' |
H13 |
N9 |
120.6 |
122.8 |
O4' |
C1' |
H13 |
C2' |
247.6 |
245.8 |
H13 |
C1' |
N9 |
C4 |
15.5 |
326.4 |
H13 |
C1' |
C2' |
H11 |
165.2 |
160.2 |
H14 |
C8 |
N7 |
C5 |
181.4 |
180.0 |
H14 |
C8 |
N9 |
C4 |
178.5 |
180.3 |
C2 |
N2 |
H15 |
H16 |
180.0 |
180.1 |
C2 |
N2 |
H16 |
H15 |
180.0 |
179.9 |
H18 |
O1C |
PC |
O3C |
126.1 |
300.0 |
C6 |
N1 |
H19 |
C2 |
180.0 |
180.0 |
H19 |
N1 |
C2 |
N2 |
0.4 |
0.0 |