PDB Chemical Component 0O2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0O2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1G PG 1.510 1.480
O2A PA 1.505 1.481
PG O3B 1.604 1.610
PG O2G 1.517 1.610
PG O3G 1.513 1.610
O3B PB 1.586 1.610
O3A PA 1.586 1.610
O3A PB 1.579 1.609
O2B PB 1.509 1.480
O1A PA 1.503 1.610
PA O5' 1.587 1.610
PB O1B 1.510 1.610
O5' C5' 1.408 1.429
C5' C4' 1.482 1.530
C4' O4' 1.500 1.437
C4' C3' 1.478 1.541
O4' C1' 1.486 1.444
O2C PC 1.500 1.479
C8 N7 1.344 1.301
C8 N9 1.343 1.366
C3' C2' 1.468 1.548
C3' O3' 1.458 1.429
N7 C5 1.344 1.355
C1' N9 1.407 1.465
C1' C2' 1.485 1.550
N9 C4 1.359 1.369
C2' O2' 1.460 1.430
O2D PD 1.525 1.480
C5 C4 1.405 1.399
C5 C6 1.395 1.414
PC O3' 1.603 1.610
PC O3C 1.596 1.610
PC O1C 1.480 1.611
C4 N3 1.351 1.338
O6 C6 1.230 1.219
C6 N1 1.338 1.352
O1D PD 1.482 1.610
O3C PD 1.595 1.610
N3 C2 1.346 1.315
PD O3D 1.502 1.610
N1 C2 1.337 1.362
C2 N2 1.408 1.372
O1D H1 0.950 0.967
O3D H2 0.950 0.967
O2G H3 0.950 0.967
O3G H4 0.950 0.968
O1B H5 0.950 0.967
O1A H6 0.950 0.967
C5' H7 1.100 1.090
C5' H8 1.100 1.090
C4' H9 1.100 1.090
C3' H10 1.100 1.089
C2' H11 1.100 1.090
O2' H12 0.950 0.967
C1' H13 1.100 1.090
C8 H14 1.080 1.080
N2 H15 1.000 0.970
N2 H16 1.000 0.970
O1C H18 0.950 0.966
N1 H19 1.000 0.970

Bond Angles for 0O2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1G PG O3B 109.4 109.5
O1G PG O2G 108.9 109.5
O1G PG O3G 109.5 109.5
O2A PA O5' 110.8 109.5
O2G PG O3B 108.1 109.5
O3G PG O3B 111.5 109.5
PG O3B PB 123.4 134.0
O2G PG O3G 109.6 109.5
PG O2G H3 109.5 114.0
PG O3G H4 109.5 114.0
O3A PA O5' 110.9 109.5
O1A PA O5' 109.1 109.5
PA O5' C5' 117.1 123.0
PB O1B H5 109.5 114.0
O5' C5' C4' 111.5 109.5
O5' C5' H7 109.0 109.5
O5' C5' H8 108.9 109.5
C5' C4' O4' 109.7 109.8
C5' C4' C3' 113.7 109.9
C4' C5' H7 108.9 109.5
C4' C5' H8 109.0 109.4
C5' C4' H9 108.7 109.9
O4' C4' C3' 107.3 107.3
C4' O4' C1' 104.6 106.9
O4' C4' H9 108.5 109.8
C4' C3' C2' 105.9 104.2
C4' C3' O3' 105.3 110.4
C3' C4' H9 108.8 110.0
C4' C3' H10 110.8 110.5
O4' C1' N9 109.7 110.6
O4' C1' C2' 103.4 103.5
O4' C1' H13 109.1 110.6
O2C PC O3C 110.7 109.5
C8 N7 C5 107.6 109.4
N7 C8 H14 124.2 125.2
C8 N9 C4 105.7 107.4
O3' C3' C2' 112.4 110.5
C3' C2' O2' 114.4 110.9
C2' C3' H10 111.0 110.5
C3' C2' H11 108.5 110.9
O3' C3' H10 111.1 110.6
N7 C5 C4 106.7 107.3
N7 C5 C6 135.6 134.1
C1' N9 C4 126.1 126.3
N9 C1' H13 110.2 110.5
C1' C2' H11 108.3 110.9
N9 C4 C5 108.5 106.1
N9 C4 N3 130.7 134.2
O2' C2' H11 108.6 110.8
C2' O2' H12 109.5 114.0
O2D PD O3D 109.8 109.5
C6 C5 C4 117.8 118.6
C5 C4 N3 120.8 119.7
C5 C6 N1 118.8 118.3
O1C PC O3C 111.2 109.4
PC O1C H18 109.5 114.0
O6 C6 N1 118.4 120.8
C6 N1 C2 122.4 120.4
C6 N1 H19 118.8 119.8
O1D PD O3D 113.0 109.5
PD O3D H2 109.5 114.0
N1 C2 N2 121.7 119.1
C2 N1 H19 118.8 119.8
C2 N2 H15 120.0 120.0
C2 N2 H16 120.0 120.0
H7 C5' H8 109.5 109.5
H15 N2 H16 120.0 120.0

Torsion Angles for 0O2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2G PG O1G O3B 117.9 120.0
O3G PG O1G O3B 237.6 240.0
O1G PG O3B PB 249.3 45.0
O2G PG O1G O3G 240.2 240.0
O1G PG O2G H3 0.0 180.0
O1G PG O3G H4 0.0 300.0
O3A PA O2A O5' 244.0 240.0
O1A PA O2A O5' 122.8 120.0
O2A PA O5' C5' 299.0 55.0
O1G PG O3B O2G 118.4 120.0
O1G PG O3B O3G 238.8 240.0
O2G PG O3B O3G 120.5 120.0
O3B PG O2G H3 118.7 300.0
O3B PG O3G H4 238.9 180.0
O1G PG O2G O3B 241.3 240.0
O1G PG O2G O3G 119.7 120.0
O3G PG O2G O3B 121.6 120.0
O2G PG O3B PB 130.9 285.0
O2G PG O3G H4 119.4 60.0
O1G PG O3G O3B 121.1 120.0
O1G PG O3G O2G 240.7 240.0
O2G PG O3G O3B 240.4 240.0
O3G PG O3B PB 10.4 165.0
O3G PG O2G H3 240.3 60.0
O3B PB O1B H5 236.3 60.1
O2A PA O3A O5' 115.9 120.0
O1A PA O3A O5' 235.9 239.9
O3A PA O5' C5' 46.7 175.0
O3A PB O1B H5 123.1 300.0
PG O3B PB O2B 171.9 320.0
O2B PB O1B H5 0.0 180.0
O2A PA O1A O5' 236.2 240.0
O3A PA O1A O5' 125.1 120.1
O1A PA O5' C5' 173.9 295.0
PA O5' C5' C4' 182.6 179.9
PA O5' C5' H7 302.9 300.0
PA O5' C5' H8 62.3 60.0
PG O3B PB O1B 297.7 80.0
O5' C5' C4' O4' 299.7 66.4
O5' C5' C4' C3' 59.8 184.3
C4' C5' O5' H7 239.7 240.0
C4' C5' O5' H8 120.3 120.0
O5' C5' C4' H9 181.2 305.5
H7 C5' O5' H8 240.6 240.0
O5' C5' C4' H7 120.3 120.0
O5' C5' C4' H8 239.7 240.0
O4' C4' C5' C3' 239.8 242.2
C5' C4' O4' C1' 140.1 145.9
O4' C4' C5' H9 118.5 120.9
C5' C4' C3' C2' 245.2 238.6
C5' C4' C3' O3' 126.0 119.9
C3' C4' C5' H9 238.7 238.8
C5' C4' C3' H10 5.7 357.2
H7 C5' C4' H8 119.4 120.0
C5' C4' O4' C3' 124.0 119.4
O4' C4' C5' H7 179.3 306.4
O4' C4' C5' H8 59.9 186.4
C5' C4' O4' H9 241.4 239.0
O4' C4' C3' C2' 6.7 357.9
O4' C4' C3' O3' 247.5 239.3
C3' C4' O4' H9 117.4 119.6
O4' C4' C3' H10 127.2 116.6
C4' O4' C1' N9 204.7 201.4
C4' O4' C1' C2' 327.7 319.9
C4' O4' C1' H13 83.8 78.6
C5' C4' C3' O4' 238.5 240.6
C3' C4' C5' H7 299.5 64.2
C3' C4' C5' H8 180.1 304.3
C5' C4' C3' H9 121.3 121.2
C3' C4' O4' C1' 16.1 26.5
O4' C4' C3' H9 242.8 240.5
O3' C3' C4' C2' 240.7 241.3
C4' C3' C2' O2' 210.0 221.0
C2' C3' C4' H10 239.6 241.3
C4' C3' C2' H11 88.6 97.4
O3' C3' C4' H10 120.3 122.7
C1' O4' C4' C3' 16.1 26.5
C1' O4' C4' H9 258.7 266.9
O4' C1' N9 C4 255.2 203.5
N9 C1' O4' H13 120.9 122.8
O4' C1' C2' H11 281.3 278.8
O1C PC O2C O3C 126.4 120.0
O2C PC O1C H18 360.0 180.0
N7 C8 N9 C4 358.5 0.3
C8 N7 C5 C4 359.2 359.7
C8 N7 C5 C6 179.3 180.0
C1' N9 C8 C4 181.2 179.7
C8 N9 C1' H13 194.1 146.8
C8 N9 C4 C5 0.9 359.6
C8 N9 C4 N3 181.0 180.5
C4' C3' C2' O3' 245.5 241.4
C2' C3' C4' H9 123.9 117.4
C4' C3' C2' H10 120.3 118.7
O4' C1' C2' C3' 37.2 37.0
O3' C3' C2' H10 234.8 237.3
C1' C2' C3' H11 244.2 241.8
O2' C2' C3' H11 121.5 123.6
C3' C2' O2' H12 180.0 180.0
C4' C3' O3' C2' 114.8 114.7
O3' C3' C4' H9 4.7 358.8
C4' C3' O3' H10 239.9 237.4
O3' C3' C2' O2' 324.6 339.6
C2' C3' O3' H10 125.1 122.6
O3' C3' C2' H11 203.1 216.0
C5 N7 C8 H14 181.4 180.0
N9 C4 C5 N7 359.9 0.4
C6 C5 N7 C4 180.1 180.3
N7 C5 C4 N3 179.9 179.6
N7 C5 C6 N1 180.5 180.0
O4' C1' N9 C2' 116.0 114.1
O4' C1' N9 H13 239.8 237.2
C8 N9 C1' C4 178.6 180.4
N9 C1' C2' H11 40.8 37.3
C1' N9 C4 C5 179.8 179.9
C1' N9 C4 N3 359.8 0.9
O4' C1' C2' N9 240.5 241.5
O4' C1' C2' H13 116.1 118.6
C1' C2' C3' H10 212.5 220.5
C3' C2' C1' H11 115.9 118.2
O2' C2' C1' H11 240.5 236.4
C1' C2' O2' H12 60.6 67.3
N7 C5 C4 N9 359.9 0.4
C4 N9 C1' H13 15.5 326.4
C6 C5 C4 N9 179.8 180.2
C5 C4 N9 N3 180.0 179.0
O4' C1' C2' O2' 161.8 155.2
O2' C2' C3' H10 89.7 102.3
C3' C2' O2' H11 238.6 236.3
C1' C2' O2' H11 119.3 123.6
O1D PD O2D O3D 234.1 120.0
O2D PD O3D H2 0.0 180.0
N7 C5 C4 C6 180.0 180.2
N9 C4 C5 N3 180.0 180.8
C4 C5 C6 N1 0.5 0.3
N7 C5 C6 C4 179.9 179.7
N9 C4 C5 C6 179.8 180.2
C6 C5 C4 N3 359.8 359.4
O6 C6 C5 N1 180.5 180.0
C5 C6 N1 C2 359.6 0.0
C5 C6 N1 H19 179.6 180.0
PC O3' C3' H10 16.8 2.6
O3C PC O1C H18 126.1 300.0
O2C PC O1C O3C 233.9 239.9
N9 C4 N3 C5 180.0 178.9
O6 C6 C5 C4 181.1 180.3
C5 C6 O6 N1 179.5 180.0
O6 C6 N1 C2 179.1 180.0
O6 C6 N1 H19 359.1 360.0
N1 C6 C5 C4 0.5 0.3
C6 N1 C2 N2 180.4 180.0
C2 N1 C6 H19 180.0 180.0
O2D PD O1D O3D 124.1 240.0
O1D PD O3D H2 125.0 60.0
O3C PD O3D H2 240.4 300.0
N9 C4 N3 C2 179.7 179.5
C5 C4 N3 C2 359.7 0.6
N3 C2 N1 H19 179.9 180.0
N3 C2 N2 H15 0.0 180.0
N3 C2 N2 H16 180.0 0.1
C6 N1 C2 H19 180.0 180.0
N1 C2 N2 H15 179.5 359.9
N1 C2 N2 H16 359.5 180.0
N2 C2 N1 H19 0.4 0.0
H15 N2 C2 H16 180.0 179.9
H1 O1D PD O3D 235.9 60.0
H3 O2G PG O3B 118.7 300.0
H3 O2G PG O3G 240.3 60.0
H4 O3G PG O3B 238.9 180.0
H6 O1A PA O5' 123.8 300.0
O5' C5' H7 C4' 238.1 240.0
O5' C5' H7 H8 119.0 120.0
H7 C5' C4' O4' 179.3 306.4
H7 C5' C4' C3' 299.5 64.2
C4' C5' H7 H8 240.9 240.0
H7 C5' C4' H9 60.8 185.5
O5' C5' H8 C4' 121.9 120.0
O5' C5' H8 H7 240.9 240.0
H8 C5' C4' O4' 59.9 186.4
H8 C5' C4' C3' 180.1 304.3
C4' C5' H8 H7 119.0 120.0
H8 C5' C4' H9 301.4 65.5
C5' C4' H9 O4' 119.3 120.9
C5' C4' H9 C3' 235.7 238.9
H9 C4' C5' H7 60.8 185.5
H9 C4' C5' H8 301.4 65.5
O4' C4' H9 C3' 116.4 117.9
H9 C4' O4' C1' 258.7 266.9
H9 C4' C3' C2' 123.9 117.4
H9 C4' C3' O3' 4.7 358.8
H9 C4' C3' H10 244.4 236.1
C4' C3' H10 C2' 242.7 245.2
C4' C3' H10 O3' 116.8 122.6
H10 C3' C4' H9 244.4 236.1
O3' C3' H10 C2' 125.9 122.7
H10 C3' C2' O2' 89.7 102.3
H10 C3' C2' H11 328.3 338.7
C3' C2' H11 O2' 124.9 123.7
H11 C2' C3' H10 328.3 338.7
H11 C2' O2' H12 301.3 303.7
H12 O2' C2' H11 301.3 303.7
O4' C1' H13 N9 120.6 122.8
O4' C1' H13 C2' 247.6 245.8
H13 C1' N9 C4 15.5 326.4
H13 C1' C2' H11 165.2 160.2
H14 C8 N7 C5 181.4 180.0
H14 C8 N9 C4 178.5 180.3
C2 N2 H15 H16 180.0 180.1
C2 N2 H16 H15 180.0 179.9
H18 O1C PC O3C 126.1 300.0
C6 N1 H19 C2 180.0 180.0
H19 N1 C2 N2 0.4 0.0