Atom Nomenclature for 0N8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0N8

Atom Name (V3) Atom Name (V2)
CL2 CL2
C19 C19
C18 C18
C17 C17
C20 C20
C21 C21
C16 C16
C15 C15
C11 C11
C10 C10
C9 C9
C14 C14
O27 O27
C22 C22
C23 C23
O28 O28
C24 C24
O26 O26
O25 O25
C12 C12
C13 C13
N8 N8
C7 C7
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C1 C1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27