Atom Nomenclature for 0MZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0MZ

Atom Name (V3) Atom Name (V2)
F28 F28
C27 C27
F30 F30
F29 F29
C25 C25
C26 C26
C24 C24
C23 C23
C22 C22
C21 C21
N18 N18
C17 C17
O19 O19
C16 C16
C13 C13
C14 C14
O20 O20
N15 N15
C11 C11
S12 S12
N10 N10
N9 N9
C8 C8
C6 C6
C5 C5
C4 C4
C3 C3
C2 C2
C1 C1
O1 O1
H26 H26
H24 H24
H23 H23
H22 H22
H1 H1
H161 H161
H162 H162
H13 H13
HO20 0HO2
H8 H8
H5 H5
H4 H4
H3 H3
H2 H2
HO1 HO1