PDB Chemical Component 0M9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0M9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
C5 |
1.497 |
1.530 |
| C6 |
C7 |
1.517 |
1.530 |
| O2 |
P1 |
1.505 |
1.480 |
| C7 |
N1 |
1.438 |
1.469 |
| O1 |
P1 |
1.506 |
1.609 |
| N1 |
C8 |
1.447 |
1.469 |
| P1 |
C9 |
1.829 |
1.823 |
| P1 |
O3 |
1.511 |
1.610 |
| C9 |
C8 |
1.526 |
1.530 |
| C9 |
P2 |
1.831 |
1.823 |
| O6 |
P2 |
1.507 |
1.480 |
| P2 |
O4 |
1.515 |
1.609 |
| P2 |
O5 |
1.516 |
1.610 |
| O1 |
H1 |
0.950 |
0.967 |
| O3 |
H2 |
0.950 |
0.968 |
| C9 |
H3 |
1.100 |
1.090 |
| O4 |
H4 |
0.950 |
0.967 |
| O5 |
H5 |
0.950 |
0.967 |
| C8 |
H6 |
1.100 |
1.090 |
| C8 |
H7 |
1.100 |
1.090 |
| N1 |
H8 |
1.000 |
1.009 |
| C7 |
H10 |
1.100 |
1.090 |
| C7 |
H11 |
1.100 |
1.091 |
| C6 |
H12 |
1.100 |
1.090 |
| C6 |
H13 |
1.100 |
1.090 |
| C5 |
H14 |
1.100 |
1.090 |
| C5 |
H15 |
1.100 |
1.090 |
| C5 |
H16 |
1.100 |
1.089 |
Bond Angles for 0M9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C6 |
H12 |
109.6 |
109.5 |
| C5 |
C6 |
H13 |
109.6 |
109.5 |
| C6 |
C5 |
H14 |
109.5 |
109.4 |
| C6 |
C5 |
H15 |
109.4 |
109.4 |
| C6 |
C5 |
H16 |
109.5 |
109.5 |
| C6 |
C7 |
H10 |
109.4 |
109.5 |
| C6 |
C7 |
H11 |
109.5 |
109.5 |
| O2 |
P1 |
C9 |
99.8 |
109.5 |
| C7 |
N1 |
H8 |
106.8 |
111.0 |
| O1 |
P1 |
C9 |
108.1 |
109.5 |
| O1 |
P1 |
O3 |
112.9 |
109.5 |
| P1 |
O1 |
H1 |
109.5 |
114.0 |
| N1 |
C8 |
H6 |
110.4 |
109.5 |
| N1 |
C8 |
H7 |
110.4 |
109.5 |
| O3 |
P1 |
C9 |
108.7 |
109.4 |
| P1 |
C9 |
C8 |
120.6 |
109.5 |
| P1 |
C9 |
P2 |
114.0 |
109.5 |
| P1 |
C9 |
H3 |
104.3 |
109.5 |
| P1 |
O3 |
H2 |
109.5 |
114.0 |
| P2 |
C9 |
C8 |
105.1 |
109.4 |
| C8 |
C9 |
H3 |
107.2 |
109.4 |
| C9 |
C8 |
H6 |
110.4 |
109.5 |
| C9 |
C8 |
H7 |
110.4 |
109.5 |
| C9 |
P2 |
O4 |
106.9 |
109.5 |
| C9 |
P2 |
O5 |
107.7 |
109.4 |
| P2 |
C9 |
H3 |
104.3 |
109.5 |
| O4 |
P2 |
O5 |
113.8 |
109.5 |
| P2 |
O4 |
H4 |
109.5 |
114.0 |
| P2 |
O5 |
H5 |
109.5 |
114.0 |
| H6 |
C8 |
H7 |
109.5 |
109.5 |
| H10 |
C7 |
H11 |
109.5 |
109.4 |
| H12 |
C6 |
H13 |
109.4 |
109.5 |
| H14 |
C5 |
H15 |
109.5 |
109.5 |
| H14 |
C5 |
H16 |
109.5 |
109.5 |
| H15 |
C5 |
H16 |
109.5 |
109.5 |
Torsion Angles for 0M9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C6 |
C7 |
H10 |
342.8 |
60.0 |
| C5 |
C6 |
C7 |
H11 |
102.8 |
300.0 |
| H12 |
C6 |
C5 |
H13 |
239.8 |
120.0 |
| H14 |
C5 |
C6 |
H15 |
240.0 |
240.0 |
| H14 |
C5 |
C6 |
H16 |
120.0 |
120.0 |
| H15 |
C5 |
C6 |
H16 |
240.0 |
240.0 |
| C6 |
C7 |
N1 |
H8 |
304.5 |
304.0 |
| H10 |
C7 |
C6 |
H11 |
240.0 |
120.0 |
| O1 |
P1 |
O2 |
C9 |
114.6 |
120.0 |
| O2 |
P1 |
O1 |
H1 |
0.0 |
180.0 |
| O3 |
P1 |
O2 |
C9 |
244.6 |
240.1 |
| O2 |
P1 |
C9 |
C8 |
139.6 |
60.0 |
| O2 |
P1 |
C9 |
P2 |
266.1 |
300.0 |
| O2 |
P1 |
C9 |
H3 |
19.3 |
180.0 |
| O2 |
P1 |
O3 |
H2 |
360.0 |
300.0 |
| C7 |
N1 |
C8 |
H6 |
289.9 |
60.0 |
| C7 |
N1 |
C8 |
H7 |
51.1 |
300.0 |
| O2 |
P1 |
O1 |
C9 |
250.4 |
240.0 |
| O3 |
P1 |
O1 |
C9 |
120.3 |
120.0 |
| O1 |
P1 |
C9 |
C8 |
21.2 |
300.0 |
| O1 |
P1 |
C9 |
P2 |
147.7 |
180.0 |
| O1 |
P1 |
C9 |
H3 |
260.8 |
60.0 |
| O1 |
P1 |
O3 |
H2 |
130.1 |
60.0 |
| N1 |
C8 |
C9 |
H3 |
329.9 |
180.0 |
| C9 |
C8 |
N1 |
H6 |
240.6 |
120.0 |
| C9 |
C8 |
N1 |
H7 |
119.4 |
240.0 |
| H6 |
C8 |
N1 |
H7 |
238.9 |
120.0 |
| O1 |
P1 |
C9 |
O3 |
122.9 |
120.0 |
| C9 |
P1 |
O1 |
H1 |
109.6 |
300.0 |
| C9 |
P1 |
O3 |
H2 |
250.0 |
180.0 |
| P2 |
C9 |
P1 |
C8 |
126.6 |
240.0 |
| C8 |
C9 |
P1 |
H3 |
120.3 |
240.0 |
| P1 |
C9 |
C8 |
H6 |
91.6 |
60.0 |
| P1 |
C9 |
C8 |
H7 |
330.5 |
180.0 |
| P1 |
C9 |
P2 |
O4 |
205.7 |
180.0 |
| P1 |
C9 |
P2 |
O5 |
328.3 |
300.0 |
| P2 |
C9 |
P1 |
H3 |
246.9 |
120.0 |
| O2 |
P1 |
O3 |
C9 |
109.9 |
120.0 |
| O1 |
P1 |
O3 |
C9 |
240.0 |
240.0 |
| O3 |
P1 |
O1 |
H1 |
229.9 |
60.0 |
| O3 |
P1 |
C9 |
C8 |
258.2 |
180.0 |
| O3 |
P1 |
C9 |
P2 |
24.8 |
60.0 |
| O3 |
P1 |
C9 |
H3 |
137.9 |
299.9 |
| N1 |
C8 |
C9 |
H6 |
119.4 |
240.0 |
| N1 |
C8 |
C9 |
H7 |
240.6 |
120.0 |
| P1 |
C9 |
C8 |
P2 |
130.5 |
240.0 |
| P1 |
C9 |
C8 |
H3 |
241.1 |
120.0 |
| C8 |
C9 |
P2 |
O4 |
339.9 |
60.0 |
| C8 |
C9 |
P2 |
O5 |
102.6 |
180.0 |
| P2 |
C9 |
C8 |
H3 |
110.6 |
240.0 |
| H6 |
C8 |
C9 |
H7 |
121.1 |
240.0 |
| P1 |
C9 |
P2 |
C8 |
225.8 |
120.0 |
| P1 |
C9 |
P2 |
H3 |
113.1 |
240.0 |
| C8 |
C9 |
P2 |
H3 |
247.3 |
119.9 |
| P2 |
C9 |
C8 |
H6 |
321.1 |
180.0 |
| P2 |
C9 |
C8 |
H7 |
199.9 |
300.0 |
| O4 |
P2 |
C9 |
O5 |
237.3 |
240.0 |
| C9 |
P2 |
O4 |
H4 |
253.2 |
300.0 |
| C9 |
P2 |
O5 |
H5 |
109.4 |
60.0 |
| O6 |
P2 |
C9 |
C8 |
223.8 |
300.0 |
| O6 |
P2 |
C9 |
H3 |
336.5 |
180.0 |
| O6 |
P2 |
O4 |
H4 |
360.0 |
60.1 |
| O6 |
P2 |
O5 |
H5 |
360.0 |
300.0 |
| O4 |
P2 |
C9 |
C8 |
339.9 |
60.0 |
| C9 |
P2 |
O4 |
O5 |
118.7 |
120.0 |
| O4 |
P2 |
C9 |
H3 |
92.6 |
300.0 |
| O4 |
P2 |
O5 |
H5 |
227.6 |
180.0 |
| O5 |
P2 |
C9 |
C8 |
102.6 |
180.0 |
| C9 |
P2 |
O5 |
O4 |
241.7 |
240.0 |
| O5 |
P2 |
C9 |
H3 |
215.2 |
60.1 |
| O5 |
P2 |
O4 |
H4 |
134.4 |
180.0 |
| H1 |
O1 |
P1 |
C9 |
109.6 |
300.0 |
| H1 |
O1 |
P1 |
O3 |
229.9 |
60.0 |
| H2 |
O3 |
P1 |
C9 |
250.0 |
180.0 |
| P1 |
C9 |
H3 |
C8 |
128.9 |
240.0 |
| P1 |
C9 |
H3 |
P2 |
240.1 |
120.1 |
| P2 |
C9 |
H3 |
C8 |
248.8 |
119.9 |
| H3 |
C9 |
C8 |
H6 |
210.5 |
300.0 |
| H3 |
C9 |
C8 |
H7 |
89.3 |
60.0 |
| H3 |
C9 |
P2 |
O4 |
92.6 |
300.0 |
| H3 |
C9 |
P2 |
O5 |
215.2 |
60.1 |
| H4 |
O4 |
P2 |
O5 |
134.4 |
180.0 |
| N1 |
C8 |
H6 |
H7 |
121.7 |
240.0 |
| H6 |
C8 |
C9 |
H3 |
210.5 |
300.0 |
| C9 |
C8 |
H6 |
H7 |
238.3 |
120.0 |
| N1 |
C8 |
H7 |
H6 |
238.3 |
120.0 |
| H7 |
C8 |
C9 |
H3 |
89.3 |
60.0 |
| C9 |
C8 |
H7 |
H6 |
121.7 |
240.0 |
| H8 |
N1 |
C8 |
H6 |
168.4 |
296.0 |
| H8 |
N1 |
C8 |
H7 |
289.6 |
176.1 |
| C6 |
C7 |
H10 |
H11 |
120.0 |
240.0 |
| H10 |
C7 |
N1 |
H8 |
184.6 |
64.0 |
| C6 |
C7 |
H11 |
H10 |
240.0 |
120.0 |
| H11 |
C7 |
N1 |
H8 |
64.5 |
183.9 |
| C5 |
C6 |
H12 |
H13 |
120.3 |
239.9 |
| H12 |
C6 |
C5 |
H14 |
300.0 |
60.0 |
| H12 |
C6 |
C5 |
H15 |
59.9 |
180.0 |
| H12 |
C6 |
C5 |
H16 |
179.9 |
300.0 |
| H12 |
C6 |
C7 |
H10 |
222.9 |
180.0 |
| H12 |
C6 |
C7 |
H11 |
342.9 |
60.0 |
| C5 |
C6 |
H13 |
H12 |
239.7 |
120.0 |
| H13 |
C6 |
C5 |
H14 |
60.1 |
300.0 |
| H13 |
C6 |
C5 |
H15 |
180.1 |
60.0 |
| H13 |
C6 |
C5 |
H16 |
300.1 |
180.0 |
| H13 |
C6 |
C7 |
H10 |
102.8 |
300.0 |
| H13 |
C6 |
C7 |
H11 |
222.8 |
180.0 |
| H14 |
C5 |
C6 |
H12 |
300.0 |
60.0 |
| H14 |
C5 |
C6 |
H13 |
60.1 |
300.0 |
| C6 |
C5 |
H14 |
H15 |
120.0 |
119.9 |
| C6 |
C5 |
H14 |
H16 |
240.0 |
240.0 |
| H15 |
C5 |
H14 |
H16 |
120.0 |
120.0 |
| H15 |
C5 |
C6 |
H12 |
59.9 |
180.0 |
| H15 |
C5 |
C6 |
H13 |
180.1 |
60.0 |
| C6 |
C5 |
H15 |
H14 |
240.0 |
240.1 |
| C6 |
C5 |
H15 |
H16 |
120.0 |
120.0 |
| H14 |
C5 |
H15 |
H16 |
240.0 |
239.9 |
| H16 |
C5 |
C6 |
H12 |
179.9 |
300.0 |
| H16 |
C5 |
C6 |
H13 |
300.1 |
180.0 |
| C6 |
C5 |
H16 |
H14 |
120.0 |
120.0 |
| C6 |
C5 |
H16 |
H15 |
240.0 |
240.0 |
| H14 |
C5 |
H16 |
H15 |
120.0 |
120.1 |