PDB Chemical Component 0M6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0M6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CD2 |
CG |
1.556 |
1.530 |
| CG |
CB |
1.515 |
1.529 |
| CG |
CD1 |
1.500 |
1.530 |
| CB |
CA |
1.544 |
1.530 |
| CAH |
CAJ |
1.417 |
1.383 |
| CAH |
CAI |
1.410 |
1.383 |
| CAJ |
CAL |
1.403 |
1.381 |
| CAX |
OAF |
1.401 |
1.430 |
| CAX |
CAZ |
1.524 |
1.530 |
| O |
C |
1.244 |
1.212 |
| CA |
C |
1.546 |
1.507 |
| CA |
N |
1.471 |
1.465 |
| CAI |
CAK |
1.398 |
1.381 |
| CAL |
CAV |
1.414 |
1.389 |
| C |
NAQ |
1.334 |
1.348 |
| N |
CAU |
1.347 |
1.348 |
| NAQ |
CAZ |
1.461 |
1.465 |
| CAZ |
CAN |
1.566 |
1.530 |
| CAK |
CAV |
1.401 |
1.389 |
| CAV |
NAP |
1.336 |
1.398 |
| CAU |
NAP |
1.361 |
1.347 |
| CAU |
SAG |
1.670 |
1.712 |
| CAN |
CAM |
1.531 |
1.530 |
| CAM |
OAE |
1.433 |
1.428 |
| CAK |
H1 |
1.080 |
1.080 |
| CAI |
H2 |
1.080 |
1.080 |
| CAH |
H3 |
1.080 |
1.080 |
| CAJ |
H4 |
1.080 |
1.080 |
| CAL |
H5 |
1.080 |
1.080 |
| NAP |
H6 |
1.000 |
0.971 |
| N |
H7 |
1.000 |
0.970 |
| CA |
H8 |
1.100 |
1.090 |
| CB |
H9 |
1.100 |
1.091 |
| CB |
H10 |
1.100 |
1.090 |
| CG |
H11 |
1.100 |
1.090 |
| CD2 |
H12 |
1.100 |
1.090 |
| CD2 |
H13 |
1.100 |
1.090 |
| CD2 |
H14 |
1.100 |
1.090 |
| CD1 |
H15 |
1.100 |
1.090 |
| CD1 |
H16 |
1.100 |
1.090 |
| CD1 |
H17 |
1.100 |
1.090 |
| NAQ |
H18 |
1.000 |
0.971 |
| CAZ |
H19 |
1.100 |
1.090 |
| CAX |
H20 |
1.100 |
1.089 |
| CAX |
H21 |
1.100 |
1.089 |
| OAF |
H22 |
0.950 |
0.967 |
| CAN |
H23 |
1.100 |
1.090 |
| CAN |
H24 |
1.100 |
1.090 |
| CAM |
H25 |
1.100 |
1.090 |
| CAM |
H26 |
1.100 |
1.091 |
| OAE |
H27 |
0.950 |
0.967 |
Bond Angles for 0M6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD2 |
CG |
CD1 |
113.4 |
109.5 |
| CD2 |
CG |
H11 |
106.4 |
109.4 |
| CG |
CB |
H9 |
108.4 |
109.5 |
| CG |
CB |
H10 |
108.4 |
109.5 |
| CD1 |
CG |
H11 |
107.0 |
109.5 |
| CG |
CD1 |
H15 |
109.5 |
109.5 |
| CG |
CD1 |
H16 |
109.4 |
109.5 |
| CG |
CD1 |
H17 |
109.5 |
109.5 |
| CB |
CA |
C |
103.3 |
109.4 |
| CB |
CA |
H8 |
110.1 |
109.5 |
| CAH |
CAJ |
CAL |
118.3 |
120.0 |
| CAJ |
CAH |
H3 |
119.9 |
119.9 |
| CAH |
CAJ |
H4 |
120.8 |
120.0 |
| CAH |
CAI |
H2 |
119.2 |
119.9 |
| CAJ |
CAL |
CAV |
120.6 |
120.0 |
| CAL |
CAJ |
H4 |
120.8 |
120.0 |
| CAJ |
CAL |
H5 |
119.7 |
120.0 |
| OAF |
CAX |
H20 |
110.0 |
109.5 |
| OAF |
CAX |
H21 |
110.0 |
109.5 |
| CAX |
OAF |
H22 |
109.5 |
113.9 |
| CAX |
CAZ |
CAN |
115.4 |
109.5 |
| CAX |
CAZ |
H19 |
107.5 |
109.5 |
| O |
C |
NAQ |
123.7 |
120.0 |
| CA |
C |
NAQ |
113.4 |
120.0 |
| C |
CA |
H8 |
110.1 |
109.4 |
| CA |
N |
H7 |
118.2 |
120.0 |
| CAI |
CAK |
CAV |
118.1 |
119.9 |
| CAI |
CAK |
H1 |
121.0 |
120.0 |
| CAK |
CAV |
CAL |
121.2 |
119.8 |
| CAL |
CAV |
NAP |
119.7 |
120.1 |
| CAV |
CAL |
H5 |
119.7 |
120.0 |
| C |
NAQ |
CAZ |
120.8 |
120.0 |
| C |
NAQ |
H18 |
119.6 |
119.9 |
| NAQ |
CAZ |
CAN |
113.4 |
109.4 |
| CAZ |
NAQ |
H18 |
119.6 |
120.0 |
| NAQ |
CAZ |
H19 |
108.2 |
109.4 |
| CAZ |
CAN |
CAM |
109.8 |
109.5 |
| CAN |
CAZ |
H19 |
107.0 |
109.5 |
| CAZ |
CAN |
H23 |
109.4 |
109.5 |
| CAZ |
CAN |
H24 |
109.4 |
109.5 |
| CAK |
CAV |
NAP |
119.1 |
120.1 |
| CAV |
CAK |
H1 |
120.9 |
120.0 |
| CAV |
NAP |
H6 |
118.6 |
120.0 |
| CAU |
NAP |
H6 |
118.6 |
120.0 |
| CAN |
CAM |
OAE |
111.1 |
109.5 |
| CAM |
CAN |
H23 |
109.4 |
109.4 |
| CAM |
CAN |
H24 |
109.4 |
109.4 |
| CAN |
CAM |
H25 |
109.1 |
109.5 |
| CAN |
CAM |
H26 |
109.0 |
109.4 |
| OAE |
CAM |
H25 |
109.0 |
109.5 |
| OAE |
CAM |
H26 |
109.1 |
109.5 |
| CAM |
OAE |
H27 |
109.5 |
114.0 |
| H9 |
CB |
H10 |
109.5 |
109.4 |
| H12 |
CD2 |
H13 |
109.5 |
109.5 |
| H12 |
CD2 |
H14 |
109.4 |
109.5 |
| H13 |
CD2 |
H14 |
109.5 |
109.5 |
| H15 |
CD1 |
H16 |
109.5 |
109.4 |
| H15 |
CD1 |
H17 |
109.5 |
109.5 |
| H16 |
CD1 |
H17 |
109.5 |
109.4 |
| H20 |
CAX |
H21 |
109.5 |
109.5 |
| H23 |
CAN |
H24 |
109.5 |
109.5 |
| H25 |
CAM |
H26 |
109.5 |
109.4 |
Torsion Angles for 0M6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD2 |
CG |
CB |
H9 |
305.9 |
304.4 |
| CD2 |
CG |
CB |
H10 |
64.7 |
184.4 |
| CD1 |
CG |
CD2 |
H11 |
117.3 |
120.0 |
| CD2 |
CG |
CD1 |
H15 |
180.0 |
180.0 |
| CD2 |
CG |
CD1 |
H16 |
300.0 |
300.0 |
| CD2 |
CG |
CD1 |
H17 |
60.0 |
60.0 |
| CG |
CB |
CA |
C |
184.8 |
61.3 |
| CG |
CB |
CA |
H8 |
67.3 |
301.4 |
| H9 |
CB |
CG |
H10 |
241.2 |
120.0 |
| CD2 |
CG |
CD1 |
H11 |
243.0 |
240.1 |
| CD1 |
CG |
CB |
H9 |
73.5 |
64.4 |
| CD1 |
CG |
CB |
H10 |
192.3 |
304.4 |
| H15 |
CD1 |
CG |
H16 |
240.0 |
240.0 |
| H15 |
CD1 |
CG |
H17 |
120.0 |
120.0 |
| H16 |
CD1 |
CG |
H17 |
240.0 |
240.0 |
| CB |
CA |
C |
NAQ |
268.5 |
278.0 |
| C |
CA |
CB |
H8 |
117.5 |
119.9 |
| CB |
CA |
N |
H7 |
355.3 |
262.1 |
| CAJ |
CAH |
CAI |
H2 |
179.6 |
180.0 |
| CAH |
CAJ |
CAL |
CAV |
359.4 |
0.0 |
| CAL |
CAJ |
CAH |
H4 |
180.0 |
180.0 |
| CAH |
CAJ |
CAL |
H5 |
179.4 |
180.1 |
| CAH |
CAI |
CAK |
CAV |
0.5 |
0.0 |
| CAH |
CAI |
CAK |
H1 |
180.5 |
179.7 |
| CAL |
CAJ |
CAH |
H3 |
180.5 |
180.0 |
| CAH |
CAJ |
CAL |
H4 |
180.0 |
180.0 |
| CAK |
CAV |
CAL |
CAJ |
0.6 |
0.0 |
| CAJ |
CAL |
CAV |
NAP |
181.4 |
180.3 |
| CAV |
CAL |
CAJ |
H5 |
180.0 |
180.0 |
| OAF |
CAX |
CAZ |
CAN |
314.2 |
55.0 |
| OAF |
CAX |
CAZ |
H19 |
73.5 |
175.0 |
| H20 |
CAX |
OAF |
H21 |
239.4 |
120.1 |
| NAQ |
CAZ |
CAX |
CAN |
234.4 |
240.0 |
| CAX |
CAZ |
NAQ |
H18 |
65.3 |
95.0 |
| NAQ |
CAZ |
CAX |
H19 |
115.1 |
120.0 |
| CAX |
CAZ |
CAN |
CAM |
166.6 |
175.0 |
| CAN |
CAZ |
CAX |
H19 |
240.7 |
240.0 |
| CAX |
CAZ |
CAN |
H23 |
286.7 |
295.0 |
| CAX |
CAZ |
CAN |
H24 |
46.6 |
55.0 |
| CA |
C |
O |
NAQ |
183.0 |
179.9 |
| O |
C |
CA |
H8 |
203.3 |
218.0 |
| O |
C |
NAQ |
CAZ |
358.8 |
5.5 |
| O |
C |
NAQ |
H18 |
178.8 |
185.6 |
| CB |
CA |
C |
H8 |
242.5 |
240.0 |
| O |
C |
CA |
NAQ |
177.2 |
180.1 |
| C |
CA |
N |
H7 |
109.6 |
22.1 |
| CA |
C |
NAQ |
CAZ |
176.0 |
185.6 |
| CA |
C |
NAQ |
H18 |
356.0 |
5.6 |
| CAI |
CAK |
CAV |
CAL |
359.4 |
360.0 |
| CAI |
CAK |
CAV |
NAP |
178.7 |
179.7 |
| CAV |
CAK |
CAI |
H1 |
180.0 |
180.3 |
| CAV |
CAL |
CAJ |
H4 |
179.4 |
180.0 |
| CAJ |
CAL |
CAV |
H5 |
180.0 |
180.0 |
| CAK |
CAV |
CAL |
NAP |
179.3 |
179.7 |
| CAL |
CAV |
CAK |
H1 |
179.4 |
180.3 |
| CAL |
CAV |
NAP |
H6 |
241.2 |
43.5 |
| NAQ |
C |
CA |
H8 |
26.0 |
38.0 |
| C |
NAQ |
CAZ |
CAN |
118.5 |
155.0 |
| CAZ |
NAQ |
C |
H18 |
180.0 |
180.0 |
| C |
NAQ |
CAZ |
H19 |
359.9 |
35.0 |
| N |
CAU |
NAP |
H6 |
169.3 |
5.9 |
| CAX |
CAZ |
NAQ |
CAN |
126.9 |
120.0 |
| CAX |
CAZ |
NAQ |
H19 |
245.4 |
240.0 |
| C |
NAQ |
CAZ |
H18 |
180.0 |
180.0 |
| NAQ |
CAZ |
CAN |
CAM |
287.8 |
295.0 |
| CAN |
CAZ |
NAQ |
H19 |
118.6 |
120.0 |
| NAQ |
CAZ |
CAN |
H23 |
47.9 |
55.0 |
| NAQ |
CAZ |
CAN |
H24 |
167.8 |
175.0 |
| CAX |
CAZ |
CAN |
H19 |
119.5 |
120.0 |
| CAN |
CAZ |
NAQ |
H18 |
298.5 |
335.0 |
| NAQ |
CAZ |
CAN |
H19 |
240.7 |
240.1 |
| CAZ |
CAN |
CAM |
OAE |
217.6 |
180.0 |
| CAM |
CAN |
CAZ |
H23 |
239.9 |
240.0 |
| CAM |
CAN |
CAZ |
H24 |
120.0 |
120.0 |
| CAZ |
CAN |
CAM |
H25 |
337.8 |
300.1 |
| CAZ |
CAN |
CAM |
H26 |
97.3 |
60.0 |
| H23 |
CAN |
CAZ |
H24 |
240.1 |
240.0 |
| CAJ |
CAL |
CAV |
CAK |
0.6 |
0.0 |
| CAI |
CAK |
CAV |
H1 |
180.0 |
179.7 |
| CAL |
CAV |
CAK |
NAP |
180.7 |
180.3 |
| CAK |
CAV |
CAL |
H5 |
180.7 |
180.0 |
| CAK |
CAV |
NAP |
H6 |
61.9 |
223.8 |
| CAK |
CAV |
NAP |
CAL |
180.7 |
180.3 |
| NAP |
CAV |
CAL |
H5 |
1.4 |
0.2 |
| NAP |
CAV |
CAK |
H1 |
358.7 |
360.0 |
| CAU |
NAP |
CAV |
H6 |
180.0 |
180.0 |
| CAV |
NAP |
CAU |
H6 |
180.0 |
180.0 |
| SAG |
CAU |
NAP |
H6 |
349.2 |
185.9 |
| CAM |
CAN |
CAZ |
H19 |
47.1 |
54.9 |
| CAZ |
CAN |
CAM |
H23 |
120.1 |
120.0 |
| CAZ |
CAN |
CAM |
H24 |
239.9 |
240.0 |
| OAE |
CAM |
CAN |
H25 |
239.7 |
239.9 |
| OAE |
CAM |
CAN |
H26 |
120.3 |
120.0 |
| CAN |
CAM |
OAE |
H27 |
180.0 |
180.0 |
| H23 |
CAN |
CAM |
H24 |
119.9 |
120.0 |
| H25 |
CAM |
CAN |
H26 |
240.5 |
240.1 |
| OAE |
CAM |
CAN |
H23 |
97.5 |
60.0 |
| OAE |
CAM |
CAN |
H24 |
337.6 |
300.0 |
| CAN |
CAM |
OAE |
H25 |
120.3 |
120.0 |
| CAN |
CAM |
OAE |
H26 |
239.8 |
240.0 |
| H25 |
CAM |
OAE |
H26 |
119.5 |
120.0 |
| CAI |
CAK |
H1 |
CAV |
180.0 |
180.3 |
| H1 |
CAK |
CAV |
CAL |
179.4 |
180.3 |
| H1 |
CAK |
CAV |
NAP |
358.7 |
360.0 |
| H2 |
CAI |
CAK |
CAV |
180.5 |
180.1 |
| H2 |
CAI |
CAK |
H1 |
0.5 |
359.8 |
| H3 |
CAH |
CAJ |
CAL |
180.5 |
180.0 |
| H3 |
CAH |
CAJ |
H4 |
0.5 |
360.0 |
| H3 |
CAH |
CAI |
H2 |
359.6 |
360.0 |
| CAH |
CAJ |
H4 |
CAL |
180.0 |
180.0 |
| H4 |
CAJ |
CAH |
H3 |
0.5 |
360.0 |
| H4 |
CAJ |
CAL |
CAV |
179.4 |
180.0 |
| H4 |
CAJ |
CAL |
H5 |
359.4 |
0.0 |
| CAJ |
CAL |
H5 |
CAV |
180.0 |
180.0 |
| H5 |
CAL |
CAJ |
H4 |
359.4 |
0.0 |
| H5 |
CAL |
CAV |
NAP |
1.4 |
0.2 |
| CB |
CA |
H8 |
C |
113.2 |
119.9 |
| H8 |
CA |
C |
NAQ |
26.0 |
38.0 |
| H8 |
CA |
N |
H7 |
233.2 |
142.0 |
| CG |
CB |
H9 |
H10 |
118.1 |
240.0 |
| H9 |
CB |
CA |
C |
64.2 |
181.3 |
| H9 |
CB |
CA |
H8 |
306.7 |
61.4 |
| CG |
CB |
H10 |
H9 |
241.9 |
120.0 |
| H10 |
CB |
CA |
C |
305.4 |
301.2 |
| H10 |
CB |
CA |
H8 |
187.9 |
181.3 |
| CD2 |
CG |
H11 |
CD1 |
121.5 |
119.9 |
| H11 |
CG |
CB |
H9 |
188.3 |
184.4 |
| H11 |
CG |
CB |
H10 |
307.1 |
64.4 |
| H11 |
CG |
CD1 |
H15 |
297.0 |
300.0 |
| H11 |
CG |
CD1 |
H16 |
57.0 |
59.9 |
| H11 |
CG |
CD1 |
H17 |
177.0 |
179.9 |
| H12 |
CD2 |
CG |
CD1 |
55.1 |
64.0 |
| H12 |
CD2 |
CG |
H11 |
297.8 |
304.0 |
| H13 |
CD2 |
H12 |
H14 |
120.0 |
120.0 |
| H13 |
CD2 |
CG |
CD1 |
175.2 |
184.1 |
| H13 |
CD2 |
CG |
H11 |
57.8 |
64.1 |
| H12 |
CD2 |
H13 |
H14 |
240.0 |
240.0 |
| H14 |
CD2 |
CG |
CD1 |
295.1 |
304.0 |
| H14 |
CD2 |
CG |
H11 |
177.8 |
184.1 |
| H12 |
CD2 |
H14 |
H13 |
120.0 |
120.0 |
| H15 |
CD1 |
CG |
H11 |
297.0 |
300.0 |
| CG |
CD1 |
H15 |
H16 |
120.0 |
120.0 |
| CG |
CD1 |
H15 |
H17 |
240.0 |
239.9 |
| H16 |
CD1 |
H15 |
H17 |
120.0 |
119.9 |
| H16 |
CD1 |
CG |
H11 |
57.0 |
59.9 |
| CG |
CD1 |
H16 |
H15 |
240.0 |
240.0 |
| CG |
CD1 |
H16 |
H17 |
120.0 |
120.1 |
| H15 |
CD1 |
H16 |
H17 |
240.0 |
240.1 |
| H17 |
CD1 |
CG |
H11 |
177.0 |
179.9 |
| CG |
CD1 |
H17 |
H15 |
120.0 |
120.1 |
| CG |
CD1 |
H17 |
H16 |
240.0 |
240.0 |
| H15 |
CD1 |
H17 |
H16 |
120.0 |
119.9 |
| C |
NAQ |
H18 |
CAZ |
180.0 |
180.0 |
| H18 |
NAQ |
CAZ |
CAN |
298.5 |
335.0 |
| H18 |
NAQ |
CAZ |
H19 |
179.9 |
215.0 |
| CAX |
CAZ |
H19 |
CAN |
235.5 |
240.0 |
| NAQ |
CAZ |
H19 |
CAN |
122.5 |
119.9 |
| H19 |
CAZ |
NAQ |
H18 |
179.9 |
215.0 |
| H19 |
CAZ |
CAN |
CAM |
47.1 |
54.9 |
| H19 |
CAZ |
CAN |
H23 |
167.2 |
175.0 |
| H19 |
CAZ |
CAN |
H24 |
287.1 |
295.0 |
| OAF |
CAX |
H20 |
H21 |
121.0 |
239.9 |
| H20 |
CAX |
OAF |
H22 |
299.7 |
60.1 |
| H20 |
CAX |
CAZ |
CAN |
194.5 |
175.0 |
| H20 |
CAX |
CAZ |
H19 |
313.8 |
295.0 |
| OAF |
CAX |
H21 |
H20 |
239.0 |
120.1 |
| H21 |
CAX |
OAF |
H22 |
60.3 |
300.0 |
| H21 |
CAX |
CAZ |
CAN |
73.9 |
295.0 |
| H21 |
CAX |
CAZ |
H19 |
193.2 |
55.0 |
| H22 |
OAF |
CAX |
H20 |
299.7 |
60.1 |
| H22 |
OAF |
CAX |
H21 |
60.3 |
300.0 |
| CAZ |
CAN |
H23 |
CAM |
239.7 |
239.9 |
| H23 |
CAN |
CAZ |
H19 |
167.2 |
175.0 |
| CAZ |
CAN |
H23 |
H24 |
119.8 |
120.0 |
| H23 |
CAN |
CAM |
OAE |
97.5 |
60.0 |
| CAM |
CAN |
H23 |
H24 |
240.2 |
240.1 |
| H23 |
CAN |
CAM |
H25 |
217.8 |
180.0 |
| H23 |
CAN |
CAM |
H26 |
337.3 |
300.0 |
| CAZ |
CAN |
H24 |
CAM |
120.3 |
120.0 |
| H24 |
CAN |
CAZ |
H19 |
287.1 |
295.0 |
| CAZ |
CAN |
H24 |
H23 |
240.2 |
240.0 |
| H24 |
CAN |
CAM |
OAE |
337.6 |
300.0 |
| CAM |
CAN |
H24 |
H23 |
119.9 |
120.0 |
| H24 |
CAN |
CAM |
H25 |
97.9 |
60.1 |
| H24 |
CAN |
CAM |
H26 |
217.4 |
180.0 |
| CAN |
CAM |
H25 |
OAE |
238.5 |
239.9 |
| H25 |
CAM |
CAN |
H23 |
217.8 |
180.0 |
| H25 |
CAM |
CAN |
H24 |
97.9 |
60.1 |
| CAN |
CAM |
H25 |
H26 |
119.2 |
119.9 |
| OAE |
CAM |
H25 |
H26 |
240.8 |
240.0 |
| H25 |
CAM |
OAE |
H27 |
59.7 |
60.0 |
| CAN |
CAM |
H26 |
OAE |
121.5 |
120.0 |
| H26 |
CAM |
CAN |
H23 |
337.3 |
300.0 |
| H26 |
CAM |
CAN |
H24 |
217.4 |
180.0 |
| CAN |
CAM |
H26 |
H25 |
240.7 |
240.1 |
| OAE |
CAM |
H26 |
H25 |
119.2 |
120.0 |
| H26 |
CAM |
OAE |
H27 |
300.2 |
300.0 |
| H27 |
OAE |
CAM |
H25 |
59.7 |
60.0 |
| H27 |
OAE |
CAM |
H26 |
300.2 |
300.0 |