PDB Chemical Component 0M5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0M5
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C15 |
C |
1.528 |
1.530 |
C15 |
C14 |
1.551 |
1.530 |
C |
C14 |
1.549 |
1.530 |
C12 |
N |
1.490 |
1.485 |
C12 |
C11 |
1.571 |
1.550 |
N |
C14 |
1.465 |
1.469 |
N |
C13 |
1.472 |
1.481 |
C13 |
C10 |
1.546 |
1.540 |
C11 |
C10 |
1.538 |
1.545 |
C10 |
C09 |
1.560 |
1.531 |
C09 |
N02 |
1.495 |
1.464 |
N02 |
C08 |
1.406 |
1.348 |
C08 |
O |
1.240 |
1.214 |
C08 |
C07 |
1.603 |
1.494 |
O01 |
C07 |
1.232 |
1.214 |
C07 |
N01 |
1.437 |
1.348 |
N01 |
C05 |
1.486 |
1.398 |
C05 |
C06 |
1.422 |
1.389 |
C05 |
C04 |
1.428 |
1.390 |
C06 |
C01 |
1.416 |
1.383 |
F |
C01 |
1.336 |
1.350 |
C01 |
C02 |
1.409 |
1.386 |
C04 |
C03 |
1.429 |
1.380 |
C02 |
C03 |
1.402 |
1.384 |
C02 |
CL |
1.771 |
1.736 |
C03 |
H01 |
1.080 |
1.080 |
C04 |
H02 |
1.080 |
1.080 |
C06 |
H03 |
1.080 |
1.080 |
C10 |
H08 |
1.100 |
1.090 |
C11 |
H09 |
1.100 |
1.091 |
C11 |
H10 |
1.100 |
1.090 |
C15 |
H17 |
1.100 |
1.089 |
C15 |
H16 |
1.100 |
1.090 |
N01 |
H04 |
1.000 |
0.970 |
N02 |
H05 |
1.000 |
0.971 |
C09 |
H06 |
1.100 |
1.090 |
C09 |
H07 |
1.100 |
1.090 |
C12 |
H11 |
1.100 |
1.090 |
C12 |
H12 |
1.100 |
1.090 |
C13 |
H13 |
1.100 |
1.090 |
C13 |
H14 |
1.100 |
1.090 |
C14 |
H15 |
1.100 |
1.090 |
C |
H |
1.100 |
1.089 |
C |
H18 |
1.100 |
1.090 |
Bond Angles for 0M5
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C14 |
C15 |
C |
60.4 |
60.0 |
C15 |
C |
C14 |
60.5 |
60.0 |
C |
C15 |
H17 |
119.9 |
117.5 |
C |
C15 |
H16 |
119.9 |
117.5 |
C15 |
C |
H |
119.9 |
117.5 |
C15 |
C |
H18 |
119.9 |
117.5 |
C15 |
C14 |
N |
116.3 |
117.5 |
C14 |
C15 |
H17 |
119.9 |
117.5 |
C14 |
C15 |
H16 |
119.9 |
117.5 |
C15 |
C14 |
H15 |
116.3 |
117.5 |
C |
C14 |
H15 |
116.4 |
117.5 |
C12 |
N |
C14 |
121.3 |
111.0 |
C12 |
N |
C13 |
106.1 |
105.9 |
N |
C12 |
H11 |
110.3 |
110.7 |
N |
C12 |
H12 |
110.3 |
110.7 |
C12 |
C11 |
H09 |
110.3 |
110.7 |
C12 |
C11 |
H10 |
110.4 |
110.8 |
C13 |
N |
C14 |
120.7 |
110.9 |
N |
C14 |
H15 |
117.9 |
115.5 |
N |
C13 |
H13 |
110.4 |
110.0 |
N |
C13 |
H14 |
110.4 |
109.9 |
C13 |
C10 |
H08 |
108.1 |
110.3 |
C11 |
C10 |
C09 |
115.3 |
110.3 |
C11 |
C10 |
H08 |
108.1 |
110.3 |
C10 |
C09 |
N02 |
109.3 |
109.5 |
C09 |
C10 |
H08 |
107.9 |
110.3 |
C10 |
C09 |
H06 |
109.5 |
109.5 |
C10 |
C09 |
H07 |
109.5 |
109.4 |
C09 |
N02 |
H05 |
118.3 |
120.0 |
N02 |
C08 |
O |
121.0 |
120.0 |
C07 |
N01 |
H04 |
116.9 |
120.0 |
C05 |
C06 |
H03 |
118.5 |
120.0 |
C05 |
C04 |
H02 |
119.3 |
120.0 |
C01 |
C02 |
C03 |
118.5 |
120.1 |
C01 |
C02 |
CL |
122.7 |
119.9 |
C04 |
C03 |
H01 |
119.4 |
120.0 |
C03 |
C02 |
CL |
118.8 |
120.0 |
C02 |
C03 |
H01 |
119.4 |
119.9 |
H09 |
C11 |
H10 |
109.4 |
110.6 |
H17 |
C15 |
H16 |
109.5 |
115.6 |
H06 |
C09 |
H07 |
109.5 |
109.5 |
H11 |
C12 |
H12 |
109.5 |
110.7 |
H13 |
C13 |
H14 |
109.5 |
110.1 |
H |
C |
H18 |
109.5 |
115.6 |
Torsion Angles for 0M5
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C |
C15 |
C14 |
N |
107.8 |
107.5 |
C14 |
C15 |
C |
H17 |
250.4 |
107.5 |
C14 |
C15 |
C |
H16 |
109.6 |
252.5 |
C |
C15 |
C14 |
H15 |
253.7 |
252.4 |
C15 |
C |
C14 |
H15 |
106.3 |
107.5 |
H17 |
C15 |
C |
H16 |
219.1 |
144.9 |
H |
C |
C15 |
H18 |
219.2 |
214.9 |
C14 |
C15 |
C |
C14 |
-0.0 |
-0.0 |
C |
C15 |
C14 |
H17 |
109.6 |
252.6 |
C |
C15 |
C14 |
H16 |
250.5 |
107.4 |
C14 |
C15 |
C |
H |
109.6 |
107.5 |
C14 |
C15 |
C |
H18 |
250.4 |
252.6 |
C |
C14 |
C15 |
H15 |
106.3 |
107.6 |
C12 |
N |
C14 |
C15 |
73.0 |
59.8 |
C13 |
N |
C14 |
C15 |
210.5 |
177.2 |
N |
C14 |
C15 |
H15 |
214.2 |
215.1 |
H17 |
C15 |
C14 |
H16 |
140.9 |
214.9 |
C14 |
C |
C15 |
H17 |
109.6 |
252.5 |
C14 |
C |
C15 |
H16 |
250.4 |
107.5 |
C15 |
C |
C14 |
H |
109.6 |
107.5 |
C15 |
C |
C14 |
H18 |
250.4 |
252.5 |
C |
C14 |
C15 |
H17 |
250.4 |
107.4 |
C |
C14 |
C15 |
H16 |
109.5 |
252.6 |
C15 |
C14 |
C |
H15 |
253.7 |
252.5 |
N |
C14 |
C |
H15 |
148.1 |
145.1 |
C15 |
C14 |
N |
C12 |
73.0 |
59.8 |
N |
C12 |
C11 |
H09 |
120.3 |
204.2 |
N |
C12 |
C11 |
H10 |
241.4 |
81.1 |
C13 |
N |
C12 |
C14 |
217.2 |
239.5 |
C12 |
N |
C14 |
H15 |
287.7 |
274.2 |
C12 |
N |
C13 |
H13 |
156.2 |
215.4 |
C12 |
N |
C13 |
H14 |
277.4 |
94.0 |
H11 |
C12 |
N |
H12 |
238.9 |
123.2 |
C12 |
C11 |
C10 |
H08 |
266.2 |
262.9 |
H09 |
C11 |
C12 |
H10 |
238.9 |
123.1 |
N |
C14 |
C15 |
C |
107.8 |
107.5 |
C15 |
C |
C14 |
N |
254.4 |
252.5 |
N |
C14 |
C15 |
H17 |
358.2 |
215.0 |
N |
C14 |
C15 |
H16 |
217.4 |
0.1 |
C15 |
C14 |
N |
H15 |
145.3 |
145.6 |
C |
C14 |
N |
H15 |
212.4 |
214.2 |
C12 |
N |
C14 |
C13 |
222.5 |
242.6 |
C14 |
N |
C12 |
H11 |
239.2 |
41.3 |
C14 |
N |
C12 |
H12 |
0.3 |
278.1 |
C14 |
N |
C13 |
H13 |
13.1 |
94.8 |
C14 |
N |
C13 |
H14 |
134.3 |
333.4 |
C15 |
C14 |
N |
C13 |
210.5 |
177.2 |
C12 |
N |
C13 |
C14 |
143.0 |
120.5 |
C13 |
N |
C12 |
H11 |
96.4 |
280.8 |
C13 |
N |
C12 |
H12 |
217.5 |
157.6 |
C13 |
N |
C14 |
H15 |
65.2 |
31.7 |
N |
C13 |
C10 |
H08 |
78.9 |
120.3 |
H13 |
C13 |
N |
H14 |
238.8 |
121.4 |
C11 |
C10 |
C13 |
H08 |
245.9 |
241.0 |
C09 |
C10 |
C13 |
H08 |
120.2 |
122.1 |
C13 |
C10 |
C09 |
H06 |
25.0 |
303.7 |
C13 |
C10 |
C09 |
H07 |
145.1 |
63.6 |
C13 |
C10 |
C11 |
H08 |
114.0 |
119.0 |
C11 |
C10 |
C09 |
N02 |
146.3 |
67.8 |
C09 |
C10 |
C11 |
H08 |
239.2 |
237.9 |
C11 |
C10 |
C09 |
H06 |
266.3 |
187.8 |
C11 |
C10 |
C09 |
H07 |
26.3 |
307.8 |
C13 |
C10 |
C09 |
H08 |
239.7 |
237.9 |
C11 |
C10 |
C09 |
H08 |
120.9 |
122.1 |
C10 |
C09 |
N02 |
H05 |
93.2 |
0.0 |
H06 |
C09 |
C10 |
H07 |
240.0 |
240.1 |
N02 |
C09 |
C10 |
H08 |
25.4 |
305.7 |
C10 |
C09 |
N02 |
H06 |
120.0 |
120.0 |
C10 |
C09 |
N02 |
H07 |
240.0 |
240.0 |
C10 |
C09 |
N02 |
C08 |
273.3 |
180.0 |
C08 |
C07 |
N01 |
H04 |
359.6 |
5.3 |
O01 |
C07 |
N01 |
H04 |
179.3 |
185.3 |
N01 |
C05 |
C06 |
H03 |
0.5 |
359.9 |
N01 |
C05 |
C04 |
H02 |
359.5 |
0.1 |
C06 |
C05 |
C04 |
H02 |
180.5 |
180.0 |
C05 |
C04 |
C03 |
H01 |
179.8 |
180.1 |
C06 |
C01 |
C02 |
CL |
179.9 |
180.0 |
C03 |
C02 |
C01 |
CL |
180.1 |
180.0 |
C01 |
C02 |
C03 |
H01 |
179.9 |
179.9 |
C04 |
C03 |
C02 |
CL |
180.0 |
180.1 |
C02 |
C03 |
C04 |
H01 |
180.0 |
179.9 |
C01 |
C02 |
C03 |
CL |
179.9 |
180.0 |
C04 |
C03 |
C02 |
H01 |
180.0 |
180.1 |
C01 |
C02 |
CL |
C03 |
180.1 |
180.0 |
CL |
C02 |
C03 |
H01 |
0.0 |
359.9 |
H01 |
C03 |
C02 |
CL |
0.0 |
359.9 |
H02 |
C04 |
C03 |
H01 |
359.8 |
0.1 |
C11 |
C10 |
H08 |
C09 |
234.7 |
237.9 |
H08 |
C10 |
C09 |
N02 |
25.4 |
305.7 |
H08 |
C10 |
C09 |
H06 |
145.3 |
65.7 |
H08 |
C10 |
C09 |
H07 |
265.4 |
185.7 |
C12 |
C11 |
H09 |
H10 |
121.6 |
236.7 |
H09 |
C11 |
C10 |
C09 |
25.9 |
259.2 |
H09 |
C11 |
C10 |
H08 |
146.7 |
21.3 |
C12 |
C11 |
H10 |
H09 |
238.4 |
123.2 |
H10 |
C11 |
C10 |
C09 |
264.9 |
22.4 |
H10 |
C11 |
C10 |
H08 |
25.7 |
144.4 |
C14 |
C15 |
H17 |
C |
71.0 |
291.4 |
H17 |
C15 |
C |
C14 |
109.6 |
252.5 |
C |
C15 |
H17 |
H16 |
144.5 |
214.4 |
H17 |
C15 |
C |
H |
219.2 |
360.0 |
H17 |
C15 |
C |
H18 |
360.0 |
145.1 |
H17 |
C15 |
C14 |
N |
358.2 |
215.0 |
C14 |
C15 |
H17 |
H16 |
215.5 |
145.8 |
H17 |
C15 |
C14 |
H15 |
144.1 |
359.9 |
C14 |
C15 |
H16 |
C |
289.1 |
68.6 |
H16 |
C15 |
C |
C14 |
250.4 |
107.5 |
C |
C15 |
H16 |
H17 |
215.5 |
145.6 |
H16 |
C15 |
C |
H |
0.0 |
215.0 |
H16 |
C15 |
C |
H18 |
140.8 |
0.1 |
H16 |
C15 |
C14 |
N |
217.4 |
0.1 |
C14 |
C15 |
H16 |
H17 |
144.5 |
214.2 |
H16 |
C15 |
C14 |
H15 |
3.2 |
145.0 |
H05 |
N02 |
C08 |
O |
178.8 |
180.0 |
C10 |
C09 |
H06 |
N02 |
240.1 |
240.0 |
H06 |
C09 |
C10 |
H08 |
145.3 |
65.7 |
C10 |
C09 |
H06 |
H07 |
120.1 |
119.9 |
H06 |
C09 |
N02 |
H05 |
333.2 |
240.0 |
C10 |
C09 |
H07 |
N02 |
119.9 |
120.0 |
H07 |
C09 |
C10 |
H08 |
265.4 |
185.7 |
C10 |
C09 |
H07 |
H06 |
239.9 |
240.1 |
H07 |
C09 |
N02 |
H05 |
213.2 |
120.0 |
H11 |
C12 |
N |
C14 |
239.2 |
41.3 |
H11 |
C12 |
N |
C13 |
96.4 |
280.8 |
N |
C12 |
H11 |
H12 |
121.6 |
236.9 |
H11 |
C12 |
C11 |
H09 |
0.9 |
322.6 |
H11 |
C12 |
C11 |
H10 |
121.9 |
199.5 |
H12 |
C12 |
N |
C14 |
0.3 |
278.1 |
H12 |
C12 |
N |
C13 |
217.5 |
157.6 |
N |
C12 |
H12 |
H11 |
238.4 |
123.1 |
H12 |
C12 |
C11 |
H09 |
239.8 |
85.7 |
H12 |
C12 |
C11 |
H10 |
0.9 |
322.6 |
H13 |
C13 |
N |
C14 |
13.1 |
94.8 |
N |
C13 |
H13 |
H14 |
121.7 |
238.7 |
H13 |
C13 |
C10 |
H08 |
319.5 |
239.5 |
H14 |
C13 |
N |
C14 |
134.3 |
333.4 |
N |
C13 |
H14 |
H13 |
238.3 |
121.3 |
H14 |
C13 |
C10 |
H08 |
198.3 |
0.9 |
H15 |
C14 |
C15 |
C |
253.7 |
252.4 |
C15 |
C14 |
H15 |
N |
214.8 |
214.4 |
H15 |
C14 |
C15 |
H17 |
144.1 |
359.9 |
H15 |
C14 |
C15 |
H16 |
3.2 |
145.0 |
C15 |
C |
H |
C14 |
288.9 |
291.4 |
H |
C |
C15 |
H17 |
219.2 |
360.0 |
H |
C |
C15 |
H16 |
0.0 |
215.0 |
C15 |
C |
H |
H18 |
144.5 |
145.7 |
H |
C |
C14 |
H15 |
356.7 |
359.9 |
C15 |
C |
H18 |
C14 |
71.1 |
68.6 |
H18 |
C |
C15 |
H17 |
360.0 |
145.1 |
H18 |
C |
C15 |
H16 |
140.8 |
0.1 |
C15 |
C |
H18 |
H |
215.5 |
214.2 |
H18 |
C |
C14 |
H15 |
215.9 |
214.9 |