Atom Nomenclature for 0M4

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0M4

Atom Name (V3) Atom Name (V2)
C01 C01
C02 C02
C03 C03
C04 C04
C05 C05
C06 C06
CL1 CL1
F08 F08
N09 N09
C10 C10
C11 C11
N12 N12
O13 O13
O14 O14
C15 C15
C16 C16
C17 C17
N18 N18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H9 H9
H8 H8
H10 H10
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H18 H18
H17 H17
H20 H20
H19 H19