Atom Nomenclature for 0LI

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0LI

Atom Name (V3) Atom Name (V2)
N1 N1
N3 N3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C10 C10
C13 C13
C15 C15
C17 C17
C20 C20
C21 C21
C22 C22
C24 C24
C81 C81
C82 C82
C83 C83
N81 N81
N82 N82
C84 C84
C1 C1
C2 C2
C3 C3
C9 C9
C11 C11
C12 C12
O1 O1
N2 N2
C14 C14
C16 C16
C18 C18
C19 C19
F1 F1
F2 F2
F3 F3
C23 C23
C25 C25
N4 N4
H7 H7
H8 H8
H10 H10
H15 H15
H20 H20
H20A H20A
H21 H21
H21A H21A
H22 H22
H22A H22A
H24 H24
H24A H24A
H81 H81
H82 H82
H83 H83
H1 H1
H11 H11
H11A H11A
H11B H11B
HN2 HN2
H14 H14
H18 H18
H23 H23
H23A H23A
H25 H25
H25A H25A
H25B H25B