Atom Nomenclature for 0LD

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0LD

Atom Name (V3) Atom Name (V2)
C33 C33
C32 C32
C4 C4
C13 C13
C20 C20
C21 C21
C18 C18
C16 C16
C19 C19
C31 C31
C30 C30
C29 C29
C28 C28
C17 C17
C15 C15
C22 C22
C3 C3
C2 C2
C1 C1
C14 C14
N12 N12
N10 N10
N11 N11
N9 N9
N8 N8
O6 O6
O27 O27
O5 O5
O7 O7
O26 O26
O25 O25
O24 O24
P23 P23
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20