PDB Chemical Component 0KX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0KX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O4' |
C4' |
1.451 |
1.444 |
| O4' |
C1' |
1.410 |
1.444 |
| C4' |
C5' |
1.432 |
1.530 |
| C4' |
C3' |
1.468 |
1.545 |
| C5' |
O5' |
1.408 |
1.428 |
| C1' |
N1 |
1.440 |
1.466 |
| C1' |
C2' |
1.488 |
1.545 |
| O5' |
PA |
1.591 |
1.611 |
| O1A |
PA |
1.625 |
1.480 |
| O2 |
C2 |
1.161 |
1.220 |
| N1 |
C2 |
1.343 |
1.346 |
| N1 |
C6 |
1.338 |
1.363 |
| C3' |
C2' |
1.468 |
1.545 |
| C3' |
O3' |
1.336 |
1.429 |
| C2 |
N3 |
1.334 |
1.331 |
| C6 |
C5 |
1.391 |
1.354 |
| O2B |
PB |
1.457 |
1.480 |
| PA |
O2A |
1.568 |
1.610 |
| PA |
N3A |
1.692 |
1.683 |
| N3 |
C4 |
1.347 |
1.327 |
| C5 |
C4 |
1.386 |
1.410 |
| C4 |
N4 |
1.383 |
1.375 |
| O2G |
PG |
1.476 |
1.480 |
| PB |
N3A |
1.677 |
1.682 |
| PB |
O1B |
1.512 |
1.610 |
| PB |
O3B |
1.580 |
1.610 |
| PG |
O3B |
1.567 |
1.609 |
| PG |
O3G |
1.451 |
1.610 |
| PG |
O1G |
1.499 |
1.610 |
| O1G |
H1 |
0.950 |
0.967 |
| O3G |
H2 |
0.950 |
0.968 |
| O1B |
H3 |
0.950 |
0.967 |
| O2A |
H4 |
0.950 |
0.967 |
| N3A |
H5 |
1.000 |
1.009 |
| C5' |
H6 |
1.100 |
1.090 |
| C5' |
H7 |
1.100 |
1.090 |
| C4' |
H8 |
1.100 |
1.090 |
| C3' |
H9 |
1.100 |
1.091 |
| O3' |
H10 |
0.950 |
0.967 |
| C2' |
H11 |
1.100 |
1.090 |
| C2' |
H12 |
1.100 |
1.090 |
| C1' |
H13 |
1.100 |
1.090 |
| C5 |
H14 |
1.080 |
1.080 |
| C6 |
H15 |
1.080 |
1.080 |
| N4 |
H16 |
0.999 |
0.970 |
| N4 |
H17 |
1.000 |
0.970 |
Bond Angles for 0KX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4' |
C4' |
C3' |
105.2 |
104.8 |
| O4' |
C4' |
H8 |
111.8 |
110.5 |
| O4' |
C1' |
N1 |
114.0 |
110.4 |
| O4' |
C1' |
C2' |
107.7 |
104.8 |
| O4' |
C1' |
H13 |
109.4 |
110.4 |
| C4' |
C5' |
H6 |
108.0 |
109.5 |
| C4' |
C5' |
H7 |
108.0 |
109.5 |
| C4' |
C3' |
C2' |
104.2 |
104.1 |
| C4' |
C3' |
O3' |
111.0 |
110.5 |
| C3' |
C4' |
H8 |
111.5 |
110.3 |
| C4' |
C3' |
H9 |
109.4 |
110.5 |
| C1' |
N1 |
C2 |
120.9 |
119.8 |
| C1' |
N1 |
C6 |
118.8 |
119.9 |
| N1 |
C1' |
H13 |
109.0 |
110.3 |
| C1' |
C2' |
H11 |
110.8 |
110.5 |
| C1' |
C2' |
H12 |
110.8 |
110.6 |
| O1A |
PA |
O2A |
104.8 |
109.5 |
| O1A |
PA |
N3A |
109.2 |
109.5 |
| C2 |
N1 |
C6 |
120.3 |
120.4 |
| N1 |
C2 |
N3 |
121.4 |
121.1 |
| N1 |
C6 |
C5 |
119.3 |
119.2 |
| N1 |
C6 |
H15 |
120.4 |
120.3 |
| O3' |
C3' |
C2' |
111.2 |
110.5 |
| C2' |
C3' |
H9 |
109.3 |
110.5 |
| C3' |
C2' |
H11 |
110.8 |
110.5 |
| C3' |
C2' |
H12 |
110.8 |
110.5 |
| O3' |
C3' |
H9 |
111.4 |
110.6 |
| C3' |
O3' |
H10 |
109.5 |
114.0 |
| C2 |
N3 |
C4 |
121.0 |
120.7 |
| C6 |
C5 |
H14 |
120.2 |
120.5 |
| O2B |
PB |
N3A |
113.0 |
109.5 |
| O2B |
PB |
O3B |
111.5 |
109.4 |
| O2A |
PA |
N3A |
109.1 |
109.5 |
| PA |
O2A |
H4 |
109.5 |
114.0 |
| PB |
N3A |
PA |
116.4 |
111.0 |
| PA |
N3A |
H5 |
107.7 |
111.0 |
| N3 |
C4 |
N4 |
121.2 |
120.2 |
| C5 |
C4 |
N4 |
120.4 |
120.2 |
| C4 |
N4 |
H16 |
120.0 |
120.0 |
| C4 |
N4 |
H17 |
120.0 |
120.0 |
| O2G |
PG |
O3B |
112.9 |
109.5 |
| O2G |
PG |
O3G |
109.1 |
109.5 |
| O1B |
PB |
N3A |
109.1 |
109.5 |
| O3B |
PB |
N3A |
109.1 |
109.5 |
| PB |
N3A |
H5 |
107.7 |
111.0 |
| O1B |
PB |
O3B |
107.0 |
109.5 |
| PB |
O1B |
H3 |
109.5 |
114.0 |
| PG |
O3B |
PB |
126.3 |
134.1 |
| O3G |
PG |
O3B |
108.5 |
109.5 |
| O1G |
PG |
O3B |
110.1 |
109.5 |
| O1G |
PG |
O3G |
108.3 |
109.5 |
| PG |
O3G |
H2 |
109.5 |
114.0 |
| PG |
O1G |
H1 |
109.5 |
114.0 |
| H6 |
C5' |
H7 |
109.4 |
109.5 |
| H11 |
C2' |
H12 |
109.5 |
110.5 |
| H16 |
N4 |
H17 |
120.0 |
120.0 |
Torsion Angles for 0KX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4' |
C4' |
C5' |
H6 |
66.1 |
309.6 |
| O4' |
C4' |
C5' |
H7 |
184.4 |
189.6 |
| O4' |
C4' |
C3' |
C2' |
328.2 |
336.0 |
| O4' |
C4' |
C3' |
O3' |
208.3 |
217.3 |
| C3' |
C4' |
O4' |
H8 |
121.2 |
118.8 |
| O4' |
C4' |
C3' |
H9 |
85.1 |
94.6 |
| C1' |
O4' |
C4' |
C3' |
20.8 |
40.5 |
| C1' |
O4' |
C4' |
H8 |
259.6 |
281.7 |
| O4' |
C1' |
N1 |
C2 |
216.2 |
53.6 |
| O4' |
C1' |
N1 |
C6 |
35.6 |
233.3 |
| N1 |
C1' |
O4' |
H13 |
122.3 |
122.2 |
| O4' |
C1' |
C2' |
H11 |
101.0 |
265.4 |
| O4' |
C1' |
C2' |
H12 |
222.8 |
142.7 |
| H6 |
C5' |
C4' |
H7 |
241.7 |
120.0 |
| O4' |
C4' |
C3' |
H8 |
238.6 |
241.0 |
| C3' |
C4' |
C5' |
H6 |
179.4 |
65.0 |
| C3' |
C4' |
C5' |
H7 |
297.7 |
305.0 |
| O3' |
C3' |
C4' |
C2' |
240.1 |
241.3 |
| C2' |
C3' |
C4' |
H9 |
243.2 |
241.4 |
| C4' |
C3' |
C2' |
H11 |
271.2 |
118.6 |
| C4' |
C3' |
C2' |
H12 |
149.5 |
241.2 |
| O3' |
C3' |
C4' |
H9 |
123.3 |
122.7 |
| C4' |
C3' |
O3' |
H10 |
180.0 |
180.0 |
| O4' |
C1' |
N1 |
C2' |
119.9 |
115.4 |
| O4' |
C1' |
N1 |
H13 |
237.5 |
237.8 |
| N1 |
C1' |
C2' |
H11 |
224.8 |
24.2 |
| N1 |
C1' |
C2' |
H12 |
346.5 |
261.5 |
| C2 |
N1 |
C1' |
C6 |
180.6 |
180.3 |
| C1' |
N1 |
C2 |
N3 |
179.3 |
180.0 |
| C1' |
N1 |
C6 |
C5 |
180.5 |
179.7 |
| C1' |
N1 |
C6 |
H15 |
0.5 |
360.0 |
| O4' |
C1' |
C2' |
N1 |
236.3 |
241.2 |
| O4' |
C1' |
C2' |
H13 |
118.2 |
118.9 |
| C1' |
C2' |
C3' |
H9 |
273.5 |
241.4 |
| C3' |
C2' |
C1' |
H11 |
240.9 |
118.6 |
| C3' |
C2' |
C1' |
H12 |
119.1 |
241.3 |
| H11 |
C2' |
C1' |
H12 |
238.3 |
122.7 |
| O5' |
PA |
O2A |
H4 |
118.4 |
300.0 |
| O5' |
PA |
N3A |
H5 |
43.0 |
304.0 |
| O2A |
PA |
O1A |
N3A |
243.3 |
240.0 |
| O1A |
PA |
O2A |
H4 |
360.0 |
180.0 |
| PB |
N3A |
PA |
O1A |
42.2 |
300.0 |
| O1A |
PA |
N3A |
H5 |
163.2 |
64.0 |
| C1' |
N1 |
C2 |
C6 |
179.3 |
179.7 |
| C2 |
N1 |
C1' |
H13 |
338.7 |
175.8 |
| C2 |
N1 |
C6 |
C5 |
359.9 |
359.4 |
| C2 |
N1 |
C6 |
H15 |
179.8 |
179.7 |
| N1 |
C2 |
N3 |
C4 |
0.2 |
360.0 |
| C1' |
N1 |
C6 |
C2 |
180.6 |
180.3 |
| C6 |
N1 |
C1' |
H13 |
158.1 |
355.5 |
| C6 |
N1 |
C2 |
N3 |
360.0 |
0.3 |
| N1 |
C6 |
C5 |
H14 |
180.1 |
180.3 |
| O4' |
C1' |
C2' |
C3' |
341.9 |
24.0 |
| C4' |
C3' |
C2' |
O3' |
240.3 |
241.3 |
| C2' |
C3' |
C4' |
H8 |
89.6 |
95.0 |
| C4' |
C3' |
C2' |
H9 |
116.8 |
118.6 |
| C1' |
C2' |
C3' |
H11 |
119.1 |
241.4 |
| C1' |
C2' |
C3' |
H12 |
240.8 |
118.8 |
| O3' |
C3' |
C2' |
H9 |
236.6 |
237.3 |
| C2' |
C3' |
O3' |
H10 |
64.3 |
65.3 |
| H11 |
C2' |
C3' |
H12 |
121.7 |
237.4 |
| C4' |
C3' |
O3' |
C2' |
115.6 |
114.7 |
| O3' |
C3' |
C4' |
H8 |
329.7 |
336.3 |
| C4' |
C3' |
O3' |
H9 |
237.9 |
237.4 |
| C2' |
C3' |
O3' |
H9 |
122.2 |
122.7 |
| O3' |
C3' |
C2' |
H11 |
31.0 |
237.3 |
| O3' |
C3' |
C2' |
H12 |
269.3 |
359.9 |
| N3 |
C2 |
N1 |
C6 |
360.0 |
0.3 |
| C2 |
N3 |
C4 |
N4 |
179.6 |
180.0 |
| N1 |
C6 |
C5 |
H15 |
180.0 |
180.3 |
| C6 |
C5 |
C4 |
N4 |
180.3 |
179.7 |
| O2B |
PB |
N3A |
PA |
1.7 |
300.0 |
| O1B |
PB |
O2B |
N3A |
240.0 |
240.0 |
| O3B |
PB |
O2B |
N3A |
123.4 |
120.0 |
| O2B |
PB |
N3A |
H5 |
240.7 |
176.0 |
| O1B |
PB |
O2B |
O3B |
116.6 |
120.0 |
| O2B |
PB |
O1B |
H3 |
0.0 |
180.0 |
| PG |
O3B |
PB |
O2B |
296.1 |
60.0 |
| O1A |
PA |
O2A |
N3A |
116.8 |
120.0 |
| PB |
N3A |
PA |
O2A |
156.2 |
60.0 |
| O2A |
PA |
N3A |
H5 |
277.1 |
184.0 |
| O1A |
PA |
N3A |
O2A |
246.1 |
240.0 |
| N3A |
PA |
O2A |
H4 |
243.2 |
60.0 |
| O1B |
PB |
N3A |
PA |
120.5 |
60.0 |
| O3B |
PB |
N3A |
PA |
237.1 |
180.0 |
| PB |
N3A |
PA |
H5 |
239.0 |
236.0 |
| C5 |
C4 |
N3 |
N4 |
180.2 |
180.0 |
| N3 |
C4 |
N4 |
H16 |
0.0 |
359.9 |
| N3 |
C4 |
N4 |
H17 |
180.0 |
180.0 |
| N1 |
C6 |
C5 |
C4 |
0.1 |
0.6 |
| N3 |
C4 |
C5 |
N4 |
179.8 |
180.0 |
| C5 |
C4 |
N4 |
H16 |
179.9 |
179.9 |
| C5 |
C4 |
N4 |
H17 |
359.8 |
360.0 |
| H16 |
N4 |
C4 |
H17 |
180.0 |
179.9 |
| O2G |
PG |
O3B |
PB |
10.8 |
320.0 |
| O3G |
PG |
O2G |
O3B |
239.3 |
120.1 |
| O1G |
PG |
O2G |
O3B |
121.9 |
240.0 |
| O1G |
PG |
O2G |
O3G |
242.6 |
120.0 |
| O2G |
PG |
O3G |
H2 |
0.0 |
60.0 |
| O2G |
PG |
O1G |
H1 |
360.0 |
180.1 |
| O1A |
PA |
N3A |
PB |
42.2 |
300.0 |
| O2B |
PB |
N3A |
O3B |
124.6 |
120.0 |
| O2A |
PA |
N3A |
PB |
156.2 |
60.0 |
| PA |
N3A |
PB |
H5 |
121.0 |
124.0 |
| O1B |
PB |
N3A |
O3B |
243.4 |
240.0 |
| N3A |
PB |
O1B |
H3 |
237.5 |
60.0 |
| PG |
O3B |
PB |
N3A |
61.6 |
180.0 |
| O2B |
PB |
O1B |
N3A |
122.5 |
120.0 |
| O2B |
PB |
O1B |
O3B |
240.5 |
240.0 |
| O3B |
PB |
O1B |
N3A |
242.0 |
239.9 |
| O1B |
PB |
N3A |
H5 |
359.5 |
296.0 |
| PG |
O3B |
PB |
O1B |
179.5 |
300.0 |
| O2B |
PB |
O3B |
N3A |
234.4 |
240.0 |
| O1B |
PB |
O3B |
N3A |
117.9 |
120.0 |
| O3B |
PB |
N3A |
H5 |
116.1 |
56.0 |
| O3B |
PB |
O1B |
H3 |
119.5 |
300.0 |
| O3G |
PG |
O3B |
PB |
131.8 |
200.0 |
| O1G |
PG |
O3B |
PB |
250.1 |
80.0 |
| O2B |
PB |
O3B |
PG |
296.1 |
60.0 |
| O2G |
PG |
O3B |
O3G |
239.0 |
120.0 |
| O1B |
PB |
O3B |
PG |
179.5 |
300.0 |
| O1G |
PG |
O3B |
O3G |
118.3 |
240.0 |
| O3B |
PG |
O3G |
H2 |
236.7 |
180.0 |
| O3B |
PG |
O1G |
H1 |
123.6 |
60.1 |
| O2G |
PG |
O3G |
O3B |
123.3 |
240.0 |
| O1G |
PG |
O3G |
O3B |
240.5 |
120.0 |
| O3G |
PG |
O1G |
H1 |
242.0 |
300.1 |
| O2G |
PG |
O1G |
O3B |
236.4 |
120.0 |
| O2G |
PG |
O1G |
O3G |
117.9 |
240.0 |
| O3G |
PG |
O1G |
O3B |
118.5 |
240.0 |
| O1G |
PG |
O3G |
H2 |
117.2 |
300.0 |
| H1 |
O1G |
PG |
O3B |
123.6 |
60.1 |
| H1 |
O1G |
PG |
O3G |
242.0 |
300.1 |
| H2 |
O3G |
PG |
O3B |
236.7 |
180.0 |
| H3 |
O1B |
PB |
N3A |
237.5 |
60.0 |
| H3 |
O1B |
PB |
O3B |
119.5 |
300.0 |
| H4 |
O2A |
PA |
N3A |
243.2 |
60.0 |
| PB |
N3A |
H5 |
PA |
126.3 |
124.0 |
| C4' |
C5' |
H6 |
H7 |
117.4 |
240.0 |
| C4' |
C5' |
H7 |
H6 |
242.6 |
120.0 |
| O4' |
C4' |
H8 |
C3' |
117.5 |
115.4 |
| H8 |
C4' |
C5' |
H6 |
302.6 |
187.2 |
| H8 |
C4' |
C5' |
H7 |
60.9 |
67.2 |
| H8 |
C4' |
C3' |
C2' |
89.6 |
95.0 |
| H8 |
C4' |
C3' |
O3' |
329.7 |
336.3 |
| H8 |
C4' |
C3' |
H9 |
206.4 |
213.6 |
| C4' |
C3' |
H9 |
C2' |
246.4 |
245.4 |
| C4' |
C3' |
H9 |
O3' |
123.1 |
122.7 |
| H9 |
C3' |
C4' |
H8 |
206.4 |
213.6 |
| O3' |
C3' |
H9 |
C2' |
123.3 |
122.7 |
| H9 |
C3' |
C2' |
H11 |
154.4 |
0.0 |
| H9 |
C3' |
C2' |
H12 |
32.7 |
122.6 |
| H9 |
C3' |
O3' |
H10 |
302.1 |
302.7 |
| H10 |
O3' |
C3' |
C2' |
64.3 |
65.3 |
| H10 |
O3' |
C3' |
H9 |
302.1 |
302.7 |
| C1' |
C2' |
H11 |
H12 |
122.5 |
237.2 |
| H11 |
C2' |
C3' |
H9 |
154.4 |
0.0 |
| C3' |
C2' |
H11 |
H12 |
237.5 |
122.6 |
| C1' |
C2' |
H12 |
H11 |
237.5 |
122.7 |
| H12 |
C2' |
C3' |
H9 |
32.7 |
122.6 |
| C3' |
C2' |
H12 |
H11 |
122.4 |
237.4 |
| O4' |
C1' |
H13 |
N1 |
125.3 |
122.2 |
| O4' |
C1' |
H13 |
C2' |
242.8 |
244.5 |
| H13 |
C1' |
N1 |
C2 |
338.7 |
175.8 |
| H13 |
C1' |
N1 |
C6 |
158.1 |
355.5 |
| H13 |
C1' |
C2' |
H11 |
342.8 |
146.5 |
| H13 |
C1' |
C2' |
H12 |
104.5 |
23.8 |
| H14 |
C5 |
C4 |
N4 |
0.3 |
0.0 |
| N1 |
C6 |
H15 |
C5 |
180.0 |
179.7 |
| H15 |
C6 |
C5 |
H14 |
0.1 |
360.0 |
| C4 |
N4 |
H16 |
H17 |
180.0 |
180.1 |
| C4 |
N4 |
H17 |
H16 |
180.0 |
179.9 |