PDB Chemical Component 0KV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0KV

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 N3 1.423 1.348
C2 CA2 1.566 1.507
N2 C1 1.314 1.334
O2 C2 1.270 1.212
CA2 N2 1.466 1.465
CA2 HA2 1.101 1.091
CA2 HA2A 1.100 1.090
C3 CA3 1.534 1.507
C3 H3 1.080 1.080
N3 HN3 1.001 0.970
O3 C3 1.246 1.207
C4 CG3 1.555 1.530
C4 C5 1.572 1.531
C4 H4 1.100 1.090
C4 H4A 1.100 1.090
C5 C6 1.557 1.532
C5 H5 1.100 1.090
C5 H5A 1.100 1.090
C6 NE3 1.517 1.469
C6 H6 1.100 1.090
C6 H6A 1.100 1.089
C7 H7 1.100 1.090
C7 H7A 1.100 1.089
C8 C7 1.493 1.507
C8 C9 1.385 1.382
C9 H9 1.080 1.079
C10 C9 1.407 1.382
C10 H10 1.080 1.081
C11 C10 1.386 1.382
C11 H11 1.080 1.080
C12 C11 1.396 1.382
C12 C13 1.394 1.382
C12 H12 1.080 1.080
C13 C8 1.387 1.383
C13 H13 1.080 1.080
S O1S 1.421 1.421
S C7 1.784 1.813
O2S S 1.428 1.421
N1 S 1.662 1.656
N1 HN1 1.000 0.970
C1 CA1 1.555 1.501
C1 O1 1.231 1.213
CA1 N1 1.408 1.465
CA1 HA1 1.100 1.089
CB1 CA1 1.498 1.532
CB1 HB1 1.101 1.090
CB1 HB1A 1.100 1.090
CD1 N2 1.473 1.457
CD1 CG1 1.510 1.531
CD1 HD1 1.100 1.090
CD1 HD1A 1.100 1.090
CG1 CB1 1.509 1.533
CG1 HG1 1.100 1.089
CG1 HG1A 1.100 1.090
CA3 N3 1.498 1.464
CA3 CB3 1.547 1.531
CA3 HA3 1.100 1.090
CB3 CG3 1.546 1.530
CB3 HB3 1.100 1.090
CB3 HB3A 1.100 1.089
CD3 NE3 1.506 1.469
CD3 HD3 1.100 1.090
CD3 HD3A 1.100 1.090
NE3 CZ3 1.454 1.375
CG3 CD3 1.544 1.533
CG3 HG3 1.100 1.090
NH1 HNH1 1.000 0.970
NH1 HNHA 1.000 0.970
NH2 HNH2 1.000 0.970
CZ3 NH1 1.298 1.375
CZ3 NH2 1.301 1.302

Bond Angles for 0KV

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA2 C2 N3 97.3 120.0
O2 C2 N3 130.2 120.0
C2 N3 HN3 121.1 119.9
O2 C2 CA2 115.8 120.0
C2 CA2 N2 99.4 109.5
C2 CA2 HA2 113.0 109.5
C2 CA2 HA2A 113.0 109.5
HA2 CA2 HA2A 105.8 109.4
CA3 C3 H3 118.1 120.0
O3 C3 CA3 123.8 120.0
C3 CA3 N3 120.6 109.5
C3 CA3 CB3 111.8 109.5
C3 CA3 HA3 100.0 109.5
O3 C3 H3 118.1 120.0
CA3 N3 HN3 121.1 120.0
C5 C4 CG3 113.5 109.6
CG3 C4 H4 108.1 109.5
CG3 C4 H4A 108.2 109.4
C4 CG3 CB3 113.3 109.5
C4 CG3 CD3 117.0 109.3
C4 CG3 HG3 102.0 109.5
C5 C4 H4 108.1 109.5
C5 C4 H4A 108.1 109.4
C4 C5 C6 111.1 109.3
C4 C5 H5 108.9 109.5
C4 C5 H5A 108.9 109.5
H4A C4 H4 110.8 109.4
C6 C5 H5 108.9 109.5
C6 C5 H5A 108.9 109.5
C5 C6 NE3 111.8 108.8
C5 C6 H6 108.7 109.6
C5 C6 H6A 108.7 109.6
H5A C5 H5 110.0 109.5
NE3 C6 H6 108.7 109.6
NE3 C6 H6A 108.7 109.6
C6 NE3 CD3 113.5 118.8
C6 NE3 CZ3 124.9 120.6
H6A C6 H6 110.2 109.7
H7 C7 H7A 111.4 109.4
C8 C7 H7 107.5 109.4
S C7 H7 107.5 109.5
C8 C7 H7A 107.5 109.5
S C7 H7A 107.5 109.5
C8 C9 H9 121.1 120.0
C10 C9 H9 121.1 120.0
C11 C10 H10 119.6 120.0
C12 C11 H11 120.7 120.0
C13 C12 H12 120.6 119.9
C12 C13 H13 120.2 120.1
CA1 N1 HN1 104.8 120.0
O1 C1 CA1 112.8 118.2
C1 CA1 HA1 111.8 109.4
CB1 CA1 HA1 104.3 109.3
HB1 CB1 HB1A 109.7 109.7
CG1 CB1 HB1 109.3 109.7
CG1 CB1 HB1A 109.3 109.8
CG1 CD1 N2 114.2 110.4
N2 CD1 HD1 107.9 109.3
N2 CD1 HD1A 107.9 109.3
CG1 CD1 HD1 107.9 109.7
CG1 CD1 HD1A 107.9 109.0
CD1 CG1 HG1 107.2 109.6
CD1 CG1 HG1A 107.2 109.6
HD1 CD1 HD1A 110.9 109.1
HG1 CG1 HG1A 111.6 109.8
CB3 CA3 HA3 110.8 109.4
CA3 CB3 CG3 104.3 109.5
CA3 CB3 HB3 111.2 109.4
CA3 CB3 HB3A 111.2 109.5
CG3 CB3 HB3 111.2 109.5
CG3 CB3 HB3A 111.2 109.5
CB3 CG3 CD3 113.1 109.5
CB3 CG3 HG3 107.2 109.5
HB3 CB3 HB3A 107.7 109.5
NE3 CD3 HD3 108.9 109.6
NE3 CD3 HD3A 108.9 109.6
CD3 NE3 CZ3 121.5 120.6
HD3 CD3 HD3A 110.0 109.6
CG3 CD3 HD3 108.8 109.5
CG3 CD3 HD3A 108.8 109.6
NE3 CZ3 NH1 119.0 119.9
NE3 CZ3 NH2 119.5 120.0
HNH1 NH1 HNHA 120.0 120.0
CZ3 NH1 HNH1 120.0 120.0
CZ3 NH1 HNHA 120.0 119.9
CZ3 NH2 HNH2 112.0 120.0
NH1 CZ3 NH2 121.3 120.0

Torsion Angles for 0KV

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2 C2 N3 CA2 227.0 180.2
N3 C2 CA2 N2 166.3 180.0
N3 C2 CA2 HA2 286.3 300.0
N3 C2 CA2 HA2A 46.3 59.9
C3 CA3 N3 C2 265.9 275.0
CA3 N3 C2 HN3 180.0 179.9
O2 C2 CA2 N3 141.7 179.8
CA2 C2 N3 HN3 342.0 0.1
HA2 CA2 C2 HA2A 240.0 240.0
N2 C1 CA1 HA1 73.1 102.5
CA2 C2 O2 N3 233.7 180.2
O2 C2 N3 HN3 209.1 180.3
O2 C2 CA2 N2 308.0 359.8
O2 C2 CA2 HA2 67.9 119.7
O2 C2 CA2 HA2A 188.0 239.7
N2 CA2 C2 N3 166.3 180.0
C2 CA2 N2 HA2 120.0 120.0
C2 CA2 N2 HA2A 240.0 239.9
CA2 N2 CD1 HD1 307.8 281.5
CA2 N2 CD1 HD1A 67.8 40.8
HA2 CA2 C2 N3 286.3 300.0
C2 CA2 HA2 N2 248.1 240.0
C2 CA2 HA2 HA2A 124.1 120.0
HA2A CA2 C2 N3 46.3 59.9
C2 CA2 HA2A N2 111.9 120.0
C2 CA2 HA2A HA2 235.9 240.0
O3 C3 CA3 H3 180.0 180.0
C3 CA3 N3 HN3 85.9 95.0
CB3 CA3 C3 HA3 242.7 240.0
C3 CA3 CB3 CG3 160.8 175.0
C3 CA3 CB3 HB3 280.8 295.0
C3 CA3 CB3 HB3A 40.9 55.0
O3 C3 H3 CA3 180.0 180.0
H3 C3 CA3 N3 215.8 180.0
H3 C3 CA3 CB3 352.0 300.0
H3 C3 CA3 HA3 109.3 60.0
CA3 C3 O3 H3 180.0 180.0
O3 C3 CA3 N3 35.8 0.0
O3 C3 CA3 CB3 172.0 120.0
O3 C3 CA3 HA3 289.3 240.0
C5 C4 CG3 H4 240.0 239.9
C5 C4 CG3 H4A 120.0 120.0
CG3 C4 C5 C6 12.9 61.4
CG3 C4 C5 H5 132.9 301.5
CG3 C4 C5 H5A 252.9 181.4
H4A C4 CG3 H4 120.0 119.9
CA3 CB3 CG3 C4 278.5 184.9
C4 CG3 CB3 HB3 158.5 65.0
C4 CG3 CB3 HB3A 38.5 305.0
CB3 CG3 C4 CD3 225.6 240.0
CB3 CG3 C4 HG3 114.9 120.1
C4 CG3 CD3 HD3 266.2 294.8
C4 CG3 CD3 HD3A 146.2 174.5
CG3 C4 C5 H4 120.0 120.1
CG3 C4 C5 H4A 240.0 240.0
C5 C4 CG3 CB3 176.8 178.7
C5 C4 CG3 CD3 311.1 298.6
C5 C4 CG3 HG3 61.9 58.6
H4A C4 C5 H4 240.0 240.1
C6 C5 C4 H5 240.0 119.9
C6 C5 C4 H5A 120.0 240.0
C4 C5 C6 NE3 40.9 305.4
C4 C5 C6 H6 161.0 185.6
C4 C5 C6 H6A 280.9 65.2
H5A C5 C4 H5 120.0 239.9
C5 C4 H4 CG3 123.3 120.2
CG3 C4 H4 H4A 118.4 119.9
H4 C4 CG3 CB3 296.7 298.7
H4 C4 CG3 CD3 71.1 58.7
H4 C4 CG3 HG3 181.8 178.7
C5 C4 H4 H4A 241.7 240.1
H4 C4 C5 C6 252.9 301.3
H4 C4 C5 H5 12.9 181.4
H4 C4 C5 H5A 132.9 61.3
C5 C4 H4A CG3 236.7 239.9
CG3 C4 H4A H4 241.6 240.0
H4A C4 CG3 CB3 56.8 58.7
H4A C4 CG3 CD3 191.1 178.6
H4A C4 CG3 HG3 301.9 298.6
C5 C4 H4A H4 118.3 120.0
H4A C4 C5 C6 132.9 181.3
H4A C4 C5 H5 252.9 61.4
H4A C4 C5 H5A 12.9 301.3
C6 C5 C4 CG3 12.9 61.4
C6 C5 C4 H4 252.9 301.3
C6 C5 C4 H4A 132.9 181.3
C4 C5 C6 H5 120.0 240.1
C4 C5 C6 H5A 240.0 120.0
H5A C5 C6 H5 240.0 120.1
NE3 C6 C5 H6 240.0 119.8
NE3 C6 C5 H6A 120.0 240.2
C5 C6 NE3 CD3 293.5 53.6
C5 C6 NE3 CZ3 116.5 233.6
H6A C6 C5 H6 120.0 239.6
H5 C5 C4 CG3 132.9 301.5
H5 C5 C4 H4 12.9 181.4
H5 C5 C4 H4A 252.9 61.4
C4 C5 H5 C6 238.7 119.8
C4 C5 H5 H5A 119.3 239.9
C6 C5 H5 H5A 240.7 120.1
H5 C5 C6 NE3 281.0 65.3
H5 C5 C6 H6 41.0 305.5
H5 C5 C6 H6A 160.9 185.1
H5A C5 C4 CG3 252.9 181.4
H5A C5 C4 H4 132.9 61.3
H5A C5 C4 H4A 12.9 301.3
C4 C5 H5A C6 121.4 240.2
C4 C5 H5A H5 240.7 120.1
C6 C5 H5A H5 119.3 239.9
H5A C5 C6 NE3 161.0 185.4
H5A C5 C6 H6 281.0 65.6
H5A C5 C6 H6A 40.9 305.2
NE3 C6 C5 H5 281.0 65.3
NE3 C6 C5 H5A 161.0 185.4
C5 C6 NE3 H6 120.0 240.2
C5 C6 NE3 H6A 240.0 119.8
H6A C6 NE3 H6 240.0 120.5
C6 NE3 CD3 HD3 149.9 66.1
C6 NE3 CD3 HD3A 269.9 186.5
CD3 NE3 C6 CZ3 177.0 180.0
C6 NE3 CZ3 NH1 345.5 354.5
C6 NE3 CZ3 NH2 170.7 174.6
H6 C6 C5 H5 41.0 305.5
H6 C6 C5 H5A 281.0 65.6
C5 C6 H6 NE3 238.1 119.3
C5 C6 H6 H6A 119.0 239.7
NE3 C6 H6 H6A 241.0 120.4
H6 C6 NE3 CD3 173.5 173.4
H6 C6 NE3 CZ3 356.5 353.3
H6A C6 C5 H5 160.9 185.1
H6A C6 C5 H5A 40.9 305.2
C5 C6 H6A NE3 121.9 240.7
C5 C6 H6A H6 241.0 120.3
NE3 C6 H6A H6 119.0 239.6
H6A C6 NE3 CD3 53.5 293.9
H6A C6 NE3 CZ3 236.5 113.8
C8 C7 H7 H7A 117.5 120.0
S C7 H7 H7A 242.5 240.0
C8 C7 H7A H7 242.4 240.1
S C7 H7A H7 117.5 120.0
H7 C7 C8 H7A 240.0 240.1
S C7 C8 H7 240.0 240.0
S C7 C8 H7A 120.0 120.0
C9 C8 C7 H7 221.1 210.0
C9 C8 C7 H7A 341.1 330.0
C10 C9 C8 H9 180.0 180.0
C8 C9 C10 H9 180.0 180.0
H10 C10 C9 H9 16.1 0.0
C11 C10 C9 H9 196.1 180.0
H11 C11 C10 H10 352.3 359.9
C12 C11 C10 H10 172.3 180.0
C13 C12 C11 H11 169.4 179.7
H12 C12 C11 H11 349.4 360.0
H12 C12 C13 H13 20.6 359.7
C13 C8 C7 H7 50.5 29.7
C13 C8 C7 H7A 170.5 149.7
C13 C8 C9 H9 174.0 180.3
H13 C13 C12 H12 20.6 359.7
O1S S C7 H7 70.2 171.7
O1S S C7 H7A 310.2 51.7
H7 C7 S H7A 120.0 120.0
C8 C7 S H7 120.0 120.0
C8 C7 S H7A 240.0 240.0
O2S S C7 H7 292.8 308.4
O2S S C7 H7A 172.8 188.4
N1 S C7 H7 182.6 60.0
N1 S C7 H7A 62.6 300.0
C1 CA1 N1 HN1 70.7 84.9
CB1 CA1 C1 HA1 244.8 240.0
O1 C1 CA1 HA1 265.0 282.4
HA1 CA1 N1 HN1 190.5 204.8
CB1 CA1 N1 HN1 304.6 324.5
C1 CA1 CB1 HA1 119.8 120.1
HB1 CB1 CA1 HA1 57.8 48.6
CG1 CB1 HB1 HB1A 240.2 239.4
HB1A CB1 CA1 HA1 177.8 169.1
CG1 CB1 HB1A HB1 119.7 120.6
C2 CA2 N2 CD1 108.9 269.7
CG1 CD1 N2 HD1 240.0 239.2
CG1 CD1 N2 HD1A 120.0 119.9
N2 CD1 CG1 HG1 138.4 291.0
N2 CD1 CG1 HG1A 258.4 170.5
HD1 CD1 N2 HD1A 240.0 240.7
CD1 CG1 CB1 HB1 192.3 172.6
CD1 CG1 CB1 HB1A 72.4 52.0
N2 CD1 CG1 HD1 120.0 120.5
N2 CD1 CG1 HD1A 240.0 239.9
HD1 CD1 CG1 HD1A 120.0 119.4
HG1 CG1 CD1 HG1A 240.0 120.5
CG1 CD1 HD1 N2 123.9 121.2
N2 CD1 HD1 HD1A 118.1 119.5
CG1 CD1 HD1 HD1A 241.9 240.7
HD1 CD1 CG1 HG1 18.4 170.5
HD1 CD1 CG1 HG1A 138.4 50.0
CG1 CD1 HD1A N2 236.1 239.2
N2 CD1 HD1A HD1 241.9 240.6
CG1 CD1 HD1A HD1 118.1 119.8
HD1A CD1 CG1 HG1 258.4 51.1
HD1A CD1 CG1 HG1A 18.4 290.6
CG1 CB1 CA1 HA1 297.8 288.9
HB1 CB1 CG1 HB1A 120.0 120.6
HG1 CG1 CB1 HB1 72.3 292.5
HG1 CG1 CB1 HB1A 312.4 171.9
HG1 CG1 CD1 N2 138.4 291.0
HG1 CG1 CD1 HD1 18.4 170.5
HG1 CG1 CD1 HD1A 258.4 51.1
CD1 CG1 HG1 HG1A 117.2 239.6
HG1A CG1 CB1 HB1 312.3 53.1
HG1A CG1 CB1 HB1A 192.4 292.5
HG1A CG1 CD1 N2 258.4 170.5
HG1A CG1 CD1 HD1 138.4 50.0
HG1A CG1 CD1 HD1A 18.4 290.6
CD1 CG1 HG1A HG1 242.8 120.4
C2 N3 CA3 HN3 180.0 180.1
N3 CA3 C3 H3 215.8 180.0
C3 CA3 N3 CB3 135.8 120.0
C3 CA3 N3 HA3 252.8 240.0
CB3 CA3 C3 H3 352.0 300.0
C3 CA3 CB3 N3 220.2 240.0
C3 CA3 CB3 HA3 110.6 120.0
CB3 CA3 N3 HN3 310.1 335.0
C4 CG3 CB3 CA3 278.5 184.9
CG3 CB3 CA3 HB3 240.0 240.0
CG3 CB3 CA3 HB3A 120.0 120.0
CA3 CB3 CG3 CD3 142.3 65.1
CA3 CB3 CG3 HG3 30.2 305.1
HB3 CB3 CA3 HB3A 240.0 240.0
HA3 CA3 C3 H3 109.3 60.0
C3 CA3 HA3 N3 123.4 120.0
C3 CA3 HA3 CB3 241.9 240.0
HA3 CA3 N3 HN3 193.1 215.0
HA3 CA3 CB3 CG3 50.2 55.1
HA3 CA3 CB3 HB3 170.2 175.0
HA3 CA3 CB3 HB3A 290.2 295.0
CB3 CG3 C4 H4 296.7 298.7
CB3 CG3 C4 H4A 56.8 58.7
C4 CG3 CB3 CD3 136.2 119.8
C4 CG3 CB3 HG3 248.2 239.9
CG3 CB3 CA3 HA3 50.2 55.1
CA3 CB3 CG3 HB3 120.0 119.9
CA3 CB3 CG3 HB3A 240.0 240.0
HB3 CB3 CG3 HB3A 120.0 120.0
CB3 CG3 CD3 HD3 40.7 54.8
CB3 CG3 CD3 HD3A 280.7 294.5
HB3 CB3 CA3 HA3 170.2 175.0
CA3 CB3 HB3 CG3 244.2 240.1
CA3 CB3 HB3 HB3A 122.1 120.0
CG3 CB3 HB3 HB3A 237.9 239.9
HB3 CB3 CG3 CD3 22.3 305.2
HB3 CB3 CG3 HG3 270.3 185.1
HB3A CB3 CA3 HA3 290.2 295.0
CA3 CB3 HB3A CG3 115.8 120.0
CA3 CB3 HB3A HB3 237.9 240.0
CG3 CB3 HB3A HB3 122.1 120.0
HB3A CB3 CG3 CD3 262.3 185.2
HB3A CB3 CG3 HG3 150.3 65.1
C4 CG3 CD3 NE3 26.2 54.6
CD3 NE3 C6 H6 173.5 173.4
CD3 NE3 C6 H6A 53.5 293.9
C6 NE3 CD3 CZ3 182.9 180.0
CB3 CG3 CD3 NE3 160.7 174.6
HD3 CD3 NE3 HD3A 240.0 239.6
CG3 CD3 NE3 HD3 240.0 240.2
CG3 CD3 NE3 HD3A 120.0 119.9
CD3 NE3 CZ3 NH1 168.7 174.4
CD3 NE3 CZ3 NH2 353.9 354.5
NE3 CD3 HD3 HD3A 119.2 120.4
HD3 CD3 NE3 CZ3 327.1 246.2
CG3 CD3 HD3 HD3A 240.8 239.7
NE3 CD3 HD3A HD3 240.8 239.6
HD3A CD3 NE3 CZ3 87.1 6.5
CG3 CD3 HD3A HD3 119.2 120.3
CZ3 NE3 C6 H6 356.5 353.3
CZ3 NE3 C6 H6A 236.5 113.8
C6 NE3 CZ3 CD3 176.8 180.1
CZ3 NE3 CD3 HD3 327.1 246.2
CZ3 NE3 CD3 HD3A 87.1 6.5
NE3 CZ3 NH1 HNH1 185.3 5.0
NE3 CZ3 NH1 HNHA 5.3 184.9
NE3 CZ3 NH2 HNH2 174.7 180.0
NH1 CZ3 NE3 NH2 174.8 179.9
CD3 CG3 C4 H4 71.1 58.7
CD3 CG3 C4 H4A 191.1 178.6
C4 CG3 CD3 CB3 225.5 240.0
C4 CG3 CD3 HG3 110.6 120.0
CD3 CG3 CB3 HB3 22.3 305.2
CD3 CG3 CB3 HB3A 262.3 185.2
CB3 CG3 CD3 HG3 245.1 239.9
NE3 CD3 CG3 HD3 120.0 119.8
NE3 CD3 CG3 HD3A 240.0 240.1
CG3 CD3 NE3 CZ3 207.1 126.4
HD3 CD3 CG3 HD3A 119.9 120.3
HG3 CG3 C4 H4 181.8 178.7
HG3 CG3 C4 H4A 301.9 298.6
C4 CG3 HG3 CB3 119.3 120.1
C4 CG3 HG3 CD3 238.5 240.2
HG3 CG3 CB3 HB3 270.3 185.1
HG3 CG3 CB3 HB3A 150.3 65.1
CB3 CG3 HG3 CD3 119.2 120.1
HG3 CG3 CD3 HD3 155.6 174.9
HG3 CG3 CD3 HD3A 35.7 54.5
CZ3 NH1 HNH1 HNHA 180.0 180.0
HNH1 NH1 CZ3 NH2 0.0 184.9
CZ3 NH1 HNHA HNH1 180.0 180.0
HNHA NH1 CZ3 NH2 180.0 4.9
NH1 CZ3 NH2 HNH2 0.0 0.0
NE3 CZ3 NH1 NH2 185.3 180.1
HNH1 NH1 CZ3 HNHA 180.0 180.0
NE3 CZ3 NH2 NH1 174.6 179.9
NH2 CZ3 NH1 HNH1 0.0 184.9
NH2 CZ3 NH1 HNHA 180.0 4.9