Atom Nomenclature for 0KJ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0KJ

Atom Name (V3) Atom Name (V2)
O28 O28
C27 C27
N29 N29
C24 C24
C25 C25
C26 C26
C22 C22
O23 O23
C21 C21
O22 O22
N20 N20
C19 C19
C32 C32
C38 C38
C37 C37
C36 C36
C35 C35
C34 C34
C33 C33
C17 C17
O18 O18
C16 C16
N11 N11
C12 C12
C13 C13
C14 C14
C15 C15
C18 C18
S8 S8
O10 O10
O9 O9
C5 C5
C6 C6
C7 C7
C4 C4
C3 C3
S1 S1
C1 C1
N1 N1
C2 C2
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36