PDB Chemical Component 0KD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0KD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
S3 |
1.708 |
1.756 |
| C2 |
C1 |
1.374 |
1.330 |
| S3 |
C4 |
1.726 |
1.705 |
| C1 |
C5 |
1.429 |
1.443 |
| C4 |
C5 |
1.392 |
1.348 |
| C5 |
C6 |
1.451 |
1.475 |
| C6 |
N7 |
1.365 |
1.369 |
| C6 |
N10 |
1.296 |
1.314 |
| N7 |
C8 |
1.365 |
1.381 |
| N10 |
C9 |
1.435 |
1.344 |
| C8 |
N11 |
1.355 |
1.320 |
| C8 |
C9 |
1.418 |
1.409 |
| N11 |
C12 |
1.352 |
1.318 |
| C9 |
C14 |
1.423 |
1.411 |
| C12 |
C13 |
1.426 |
1.383 |
| C14 |
C13 |
1.434 |
1.398 |
| C14 |
C15 |
1.514 |
1.476 |
| C18 |
C19 |
1.431 |
1.385 |
| C18 |
C17 |
1.451 |
1.394 |
| N16 |
C15 |
1.405 |
1.347 |
| N16 |
C17 |
1.440 |
1.398 |
| C15 |
O23 |
1.230 |
1.215 |
| C19 |
C20 |
1.421 |
1.382 |
| C17 |
C22 |
1.447 |
1.388 |
| C20 |
N21 |
1.358 |
1.318 |
| C22 |
N21 |
1.365 |
1.319 |
| C1 |
H1 |
1.080 |
1.080 |
| C2 |
H2 |
1.080 |
1.079 |
| C4 |
H3 |
1.080 |
1.079 |
| N7 |
H4 |
1.000 |
0.970 |
| C12 |
H6 |
1.080 |
1.080 |
| C13 |
H7 |
1.080 |
1.080 |
| N16 |
H8 |
1.000 |
0.971 |
| C18 |
H9 |
1.079 |
1.081 |
| C19 |
H10 |
1.080 |
1.080 |
| C20 |
H11 |
1.080 |
1.080 |
| C22 |
H12 |
1.080 |
1.081 |
Bond Angles for 0KD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
S3 |
C4 |
91.2 |
92.4 |
| S3 |
C2 |
H2 |
123.6 |
124.8 |
| C2 |
C1 |
C5 |
112.5 |
113.0 |
| C2 |
C1 |
H1 |
123.7 |
123.5 |
| S3 |
C4 |
C5 |
112.5 |
111.0 |
| S3 |
C4 |
H3 |
123.8 |
124.6 |
| C1 |
C5 |
C4 |
110.9 |
113.4 |
| C1 |
C5 |
C6 |
126.2 |
123.3 |
| C5 |
C1 |
H1 |
123.7 |
123.5 |
| C4 |
C5 |
C6 |
122.9 |
123.4 |
| C5 |
C4 |
H3 |
123.8 |
124.5 |
| C5 |
C6 |
N7 |
123.4 |
125.1 |
| C5 |
C6 |
N10 |
122.7 |
125.2 |
| N7 |
C6 |
N10 |
113.9 |
109.7 |
| C6 |
N7 |
C8 |
107.9 |
107.1 |
| C6 |
N7 |
H4 |
126.0 |
126.4 |
| C6 |
N10 |
C9 |
104.5 |
109.6 |
| N7 |
C8 |
N11 |
126.3 |
133.6 |
| N7 |
C8 |
C9 |
105.4 |
106.0 |
| C8 |
N7 |
H4 |
126.1 |
126.5 |
| N10 |
C9 |
C14 |
133.0 |
133.7 |
| C9 |
C8 |
N11 |
128.3 |
120.5 |
| C8 |
N11 |
C12 |
112.8 |
122.0 |
| C8 |
C9 |
C14 |
118.7 |
118.8 |
| N11 |
C12 |
C13 |
124.7 |
121.6 |
| N11 |
C12 |
H6 |
117.6 |
119.2 |
| C9 |
C14 |
C13 |
114.0 |
117.8 |
| C9 |
C14 |
C15 |
127.0 |
121.1 |
| C13 |
C12 |
H6 |
117.6 |
119.2 |
| C12 |
C13 |
H7 |
119.2 |
120.3 |
| C14 |
C13 |
H7 |
119.3 |
120.3 |
| C14 |
C15 |
O23 |
118.8 |
120.0 |
| C18 |
C19 |
C20 |
118.6 |
119.2 |
| C19 |
C18 |
H9 |
120.3 |
120.8 |
| C18 |
C19 |
H10 |
120.7 |
120.3 |
| C18 |
C17 |
C22 |
116.5 |
119.0 |
| N16 |
C15 |
O23 |
124.0 |
120.0 |
| N16 |
C17 |
C22 |
124.6 |
120.6 |
| C17 |
N16 |
H8 |
116.5 |
119.9 |
| C19 |
C20 |
N21 |
123.1 |
120.9 |
| C20 |
C19 |
H10 |
120.7 |
120.4 |
| C19 |
C20 |
H11 |
118.4 |
119.5 |
| C17 |
C22 |
N21 |
123.4 |
120.7 |
| C17 |
C22 |
H12 |
118.3 |
119.7 |
| N21 |
C20 |
H11 |
118.4 |
119.5 |
Torsion Angles for 0KD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S3 |
C2 |
C1 |
C5 |
359.9 |
360.0 |
| S3 |
C2 |
C1 |
H1 |
179.9 |
179.8 |
| C2 |
S3 |
C4 |
C5 |
0.2 |
360.0 |
| C2 |
S3 |
C4 |
H3 |
180.3 |
180.0 |
| C2 |
C1 |
C5 |
C4 |
0.3 |
0.0 |
| C2 |
C1 |
C5 |
C6 |
180.0 |
179.8 |
| C5 |
C1 |
C2 |
H1 |
180.0 |
180.2 |
| C4 |
S3 |
C2 |
H2 |
179.9 |
180.0 |
| C1 |
C5 |
C4 |
S3 |
359.7 |
360.0 |
| S3 |
C4 |
C5 |
C6 |
179.9 |
180.3 |
| C5 |
C4 |
S3 |
H3 |
180.0 |
180.0 |
| C2 |
C1 |
C5 |
H1 |
180.0 |
179.8 |
| S3 |
C4 |
C5 |
C1 |
359.7 |
360.0 |
| C4 |
C5 |
C1 |
C6 |
180.3 |
180.3 |
| C1 |
C5 |
C4 |
H3 |
179.7 |
180.0 |
| C1 |
C5 |
C6 |
N7 |
0.9 |
180.0 |
| C1 |
C5 |
C6 |
N10 |
179.8 |
359.8 |
| S3 |
C4 |
C5 |
H3 |
180.0 |
180.0 |
| C1 |
C5 |
C4 |
C6 |
179.8 |
179.7 |
| C4 |
C5 |
C1 |
H1 |
180.3 |
180.2 |
| C4 |
C5 |
C6 |
N7 |
180.6 |
359.7 |
| C4 |
C5 |
C6 |
N10 |
359.5 |
179.5 |
| C1 |
C5 |
C6 |
C4 |
180.3 |
180.3 |
| C6 |
C5 |
C1 |
H1 |
0.0 |
359.9 |
| C6 |
C5 |
C4 |
H3 |
359.9 |
0.3 |
| N7 |
C6 |
C5 |
N10 |
181.0 |
180.2 |
| C5 |
C6 |
N7 |
C8 |
179.0 |
180.0 |
| C5 |
C6 |
N7 |
H4 |
359.0 |
0.1 |
| C5 |
C6 |
N10 |
C9 |
180.8 |
179.8 |
| C5 |
C6 |
N7 |
N10 |
179.0 |
179.8 |
| N7 |
C6 |
N10 |
C9 |
359.9 |
359.6 |
| C6 |
N7 |
C8 |
N11 |
180.2 |
180.0 |
| C6 |
N7 |
C8 |
C9 |
0.1 |
360.0 |
| C8 |
N7 |
C6 |
H4 |
180.0 |
180.0 |
| C5 |
C6 |
N10 |
N7 |
181.0 |
180.2 |
| N10 |
C6 |
N7 |
C8 |
360.0 |
0.3 |
| N10 |
C6 |
N7 |
H4 |
180.0 |
180.3 |
| C6 |
N10 |
C9 |
C14 |
179.9 |
180.1 |
| C8 |
N7 |
C6 |
N10 |
360.0 |
0.3 |
| C6 |
N7 |
C8 |
H4 |
180.0 |
180.0 |
| C9 |
C8 |
N7 |
N11 |
180.0 |
180.0 |
| N7 |
C8 |
N11 |
C12 |
179.8 |
180.0 |
| N7 |
C8 |
C9 |
C14 |
180.1 |
180.0 |
| N10 |
C9 |
C8 |
N11 |
179.8 |
179.8 |
| C8 |
C9 |
N10 |
C14 |
180.3 |
180.3 |
| N10 |
C9 |
C14 |
C13 |
180.5 |
180.3 |
| N10 |
C9 |
C14 |
C15 |
1.1 |
0.3 |
| N7 |
C8 |
N11 |
C9 |
180.0 |
180.0 |
| N11 |
C8 |
N7 |
H4 |
0.2 |
360.0 |
| N11 |
C8 |
C9 |
C14 |
0.0 |
360.0 |
| C8 |
N11 |
C12 |
C13 |
0.2 |
0.1 |
| C8 |
N11 |
C12 |
H6 |
180.2 |
180.0 |
| C6 |
N10 |
C9 |
C8 |
0.2 |
0.4 |
| N7 |
C8 |
C9 |
N11 |
180.0 |
180.0 |
| C9 |
C8 |
N7 |
H4 |
180.1 |
180.0 |
| N10 |
C9 |
C8 |
C14 |
179.7 |
179.8 |
| C9 |
C8 |
N11 |
C12 |
359.8 |
360.0 |
| C8 |
C9 |
C14 |
C13 |
0.1 |
0.0 |
| C8 |
C9 |
C14 |
C15 |
180.7 |
180.0 |
| C13 |
C12 |
N11 |
H6 |
180.0 |
180.1 |
| N11 |
C12 |
C13 |
H7 |
180.0 |
180.0 |
| C14 |
C9 |
C8 |
N11 |
0.0 |
360.0 |
| C9 |
C14 |
C13 |
H7 |
179.8 |
180.0 |
| C9 |
C14 |
C15 |
O23 |
180.0 |
0.0 |
| N11 |
C12 |
C13 |
H6 |
180.0 |
179.9 |
| C9 |
C14 |
C13 |
C12 |
359.8 |
0.0 |
| C14 |
C13 |
C12 |
H7 |
180.0 |
180.0 |
| C9 |
C14 |
C13 |
C15 |
180.5 |
180.0 |
| C14 |
C13 |
C12 |
H6 |
180.0 |
180.0 |
| C12 |
C13 |
C14 |
H7 |
180.0 |
180.0 |
| C9 |
C14 |
C15 |
C13 |
179.4 |
180.0 |
| C15 |
C14 |
C13 |
H7 |
359.3 |
0.0 |
| N16 |
C15 |
C14 |
O23 |
180.9 |
179.9 |
| C19 |
C18 |
C17 |
C22 |
0.1 |
0.3 |
| C18 |
C19 |
C20 |
N21 |
360.0 |
360.0 |
| C20 |
C19 |
C18 |
H10 |
180.0 |
180.0 |
| C18 |
C19 |
C20 |
H11 |
180.0 |
180.0 |
| N16 |
C17 |
C18 |
C22 |
179.2 |
179.7 |
| C18 |
C17 |
N16 |
H8 |
21.9 |
215.2 |
| C18 |
C17 |
C22 |
N21 |
359.8 |
359.5 |
| C18 |
C17 |
C22 |
H12 |
179.8 |
179.7 |
| C14 |
C15 |
N16 |
O23 |
179.0 |
180.1 |
| C18 |
C17 |
N16 |
C22 |
180.9 |
180.3 |
| C17 |
N16 |
C15 |
O23 |
358.9 |
355.2 |
| N16 |
C17 |
C22 |
N21 |
180.7 |
179.8 |
| N16 |
C17 |
C22 |
H12 |
0.7 |
0.0 |
| C20 |
C19 |
C18 |
H9 |
180.0 |
180.0 |
| C18 |
C19 |
C20 |
H10 |
180.0 |
180.0 |
| N21 |
C20 |
C19 |
H11 |
180.0 |
180.0 |
| C22 |
C17 |
N16 |
H8 |
201.0 |
34.9 |
| N21 |
C20 |
C19 |
H10 |
180.0 |
180.0 |
| C19 |
C20 |
N21 |
H11 |
180.0 |
180.0 |
| C17 |
C22 |
N21 |
C20 |
0.1 |
0.5 |
| C17 |
C22 |
N21 |
H12 |
180.0 |
180.2 |
| C22 |
N21 |
C20 |
H11 |
179.9 |
179.8 |
| C2 |
C1 |
H1 |
C5 |
180.0 |
180.2 |
| H1 |
C1 |
C5 |
C4 |
180.3 |
180.2 |
| H1 |
C1 |
C5 |
C6 |
0.0 |
359.9 |
| H2 |
C2 |
S3 |
C4 |
179.9 |
180.0 |
| H2 |
C2 |
C1 |
C5 |
179.9 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
359.9 |
359.8 |
| S3 |
C4 |
H3 |
C5 |
180.0 |
180.0 |
| H3 |
C4 |
C5 |
C6 |
359.9 |
0.3 |
| H4 |
N7 |
C6 |
N10 |
180.0 |
180.3 |
| C6 |
N7 |
H4 |
C8 |
180.0 |
180.0 |
| H4 |
N7 |
C8 |
N11 |
0.2 |
360.0 |
| H4 |
N7 |
C8 |
C9 |
180.1 |
180.0 |
| N11 |
C12 |
H6 |
C13 |
180.0 |
180.1 |
| H6 |
C12 |
C13 |
H7 |
360.0 |
0.0 |
| H7 |
C13 |
C12 |
H6 |
360.0 |
0.0 |
| H8 |
N16 |
C15 |
O23 |
178.9 |
175.3 |
| H8 |
N16 |
C17 |
C22 |
201.0 |
34.9 |
| H9 |
C18 |
C19 |
C20 |
180.0 |
180.0 |
| H9 |
C18 |
C19 |
H10 |
0.0 |
360.0 |
| H9 |
C18 |
C17 |
C22 |
180.1 |
180.2 |
| C18 |
C19 |
H10 |
C20 |
180.0 |
180.0 |
| H10 |
C19 |
C18 |
H9 |
0.0 |
360.0 |
| H10 |
C19 |
C20 |
N21 |
180.0 |
180.0 |
| H10 |
C19 |
C20 |
H11 |
360.0 |
0.0 |
| C19 |
C20 |
H11 |
N21 |
180.0 |
180.0 |
| H11 |
C20 |
C19 |
H10 |
360.0 |
0.0 |
| C17 |
C22 |
H12 |
N21 |
180.0 |
179.8 |