PDB Chemical Component 0JO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0JO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.251 |
1.215 |
| OXT |
C |
1.249 |
1.346 |
| C |
CA |
1.465 |
1.478 |
| CA |
CB |
1.325 |
1.345 |
| CA |
N |
1.339 |
1.368 |
| O3 |
C3 |
1.365 |
1.358 |
| N |
C4A |
1.268 |
1.302 |
| C4A |
C4 |
1.495 |
1.473 |
| C3 |
C4 |
1.390 |
1.406 |
| C3 |
C2 |
1.388 |
1.388 |
| C2A |
C2 |
1.502 |
1.506 |
| C4 |
C5 |
1.391 |
1.401 |
| C2 |
N1 |
1.350 |
1.318 |
| OP3 |
P |
1.514 |
1.480 |
| C5 |
C5A |
1.504 |
1.507 |
| C5 |
C6 |
1.391 |
1.379 |
| N1 |
C6 |
1.333 |
1.319 |
| OP4 |
C5A |
1.421 |
1.430 |
| OP4 |
P |
1.607 |
1.610 |
| OP1 |
P |
1.505 |
1.610 |
| P |
OP2 |
1.513 |
1.611 |
| OXT |
H1 |
0.950 |
0.967 |
| CB |
H2 |
1.080 |
1.080 |
| CB |
H3 |
1.080 |
1.080 |
| C4A |
H4 |
1.080 |
1.079 |
| O3 |
H5 |
0.950 |
0.967 |
| C2A |
H6 |
1.101 |
1.090 |
| C2A |
H7 |
1.100 |
1.090 |
| C2A |
H8 |
1.100 |
1.090 |
| C6 |
H9 |
1.080 |
1.080 |
| C5A |
H10 |
1.100 |
1.090 |
| C5A |
H11 |
1.100 |
1.089 |
| OP1 |
H12 |
0.950 |
0.967 |
| OP2 |
H13 |
0.950 |
0.967 |
Bond Angles for 0JO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
119.3 |
120.0 |
| OXT |
C |
CA |
119.3 |
120.0 |
| C |
CA |
CB |
122.4 |
120.0 |
| C |
CA |
N |
118.0 |
120.0 |
| CB |
CA |
N |
119.6 |
120.0 |
| CA |
CB |
H2 |
120.0 |
120.0 |
| CA |
CB |
H3 |
120.0 |
120.0 |
| CA |
N |
C4A |
123.6 |
120.0 |
| O3 |
C3 |
C2 |
119.8 |
120.6 |
| N |
C4A |
C4 |
121.0 |
120.0 |
| N |
C4A |
H4 |
119.5 |
120.0 |
| C4A |
C4 |
C5 |
121.3 |
121.0 |
| C4 |
C4A |
H4 |
119.5 |
120.0 |
| C3 |
C4 |
C5 |
117.9 |
118.1 |
| C3 |
C2 |
N1 |
121.2 |
120.8 |
| C2A |
C2 |
N1 |
118.5 |
119.6 |
| C4 |
C5 |
C5A |
121.8 |
120.5 |
| C4 |
C5 |
C6 |
120.6 |
119.0 |
| C2 |
N1 |
C6 |
120.6 |
122.2 |
| OP3 |
P |
OP2 |
111.8 |
109.4 |
| C5 |
C5A |
H10 |
109.1 |
109.5 |
| C5 |
C5A |
H11 |
109.0 |
109.5 |
| C5 |
C6 |
H9 |
119.9 |
119.4 |
| N1 |
C6 |
H9 |
119.9 |
119.5 |
| OP4 |
C5A |
H10 |
109.1 |
109.4 |
| OP4 |
C5A |
H11 |
109.1 |
109.5 |
| OP4 |
P |
OP2 |
105.7 |
109.5 |
| OP1 |
P |
OP2 |
114.7 |
109.5 |
| P |
OP2 |
H13 |
109.5 |
114.0 |
| H2 |
CB |
H3 |
120.0 |
119.9 |
| H6 |
C2A |
H7 |
109.5 |
109.5 |
| H6 |
C2A |
H8 |
109.5 |
109.4 |
| H7 |
C2A |
H8 |
109.5 |
109.5 |
| H10 |
C5A |
H11 |
109.5 |
109.5 |
Torsion Angles for 0JO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OXT |
C |
O |
CA |
180.7 |
180.2 |
| O |
C |
CA |
CB |
16.6 |
175.3 |
| O |
C |
CA |
N |
197.8 |
355.3 |
| O |
C |
OXT |
CA |
179.3 |
179.8 |
| OXT |
C |
CA |
CB |
195.9 |
355.1 |
| OXT |
C |
CA |
N |
17.1 |
175.1 |
| CB |
CA |
C |
N |
178.8 |
180.0 |
| C |
CA |
CB |
H2 |
181.2 |
180.0 |
| C |
CA |
CB |
H3 |
1.2 |
359.9 |
| C |
CA |
N |
C4A |
253.6 |
48.1 |
| C |
CA |
CB |
N |
181.2 |
180.0 |
| CB |
CA |
N |
C4A |
74.8 |
228.1 |
| H2 |
CB |
CA |
H3 |
180.0 |
180.1 |
| C |
CA |
N |
CB |
178.8 |
180.0 |
| N |
CA |
CB |
H2 |
360.0 |
0.0 |
| N |
CA |
CB |
H3 |
180.0 |
180.0 |
| CA |
N |
C4A |
C4 |
179.6 |
185.2 |
| CA |
N |
C4A |
H4 |
359.6 |
5.2 |
| O3 |
C3 |
C4 |
C5 |
180.0 |
180.3 |
| O3 |
C3 |
C2 |
N1 |
180.0 |
179.9 |
| N |
C4A |
C4 |
C5 |
132.4 |
180.0 |
| C4 |
C4A |
N |
H4 |
180.0 |
180.0 |
| N |
C4A |
C4 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C4A |
C5 |
179.6 |
180.2 |
| C4A |
C4 |
C5 |
C5A |
359.2 |
360.0 |
| C4A |
C4 |
C5 |
C6 |
179.8 |
179.8 |
| C4A |
C4 |
C3 |
C5 |
180.4 |
179.8 |
| C3 |
C4 |
C4A |
H4 |
132.0 |
180.2 |
| C3 |
C4 |
C5 |
C5A |
179.6 |
179.8 |
| C3 |
C4 |
C5 |
C6 |
0.1 |
359.6 |
| C2 |
C3 |
C4 |
C5 |
359.6 |
0.2 |
| C2A |
C2 |
C3 |
N1 |
179.9 |
180.1 |
| C3 |
C2 |
N1 |
C6 |
359.9 |
0.1 |
| C3 |
C2 |
C2A |
N1 |
180.1 |
179.9 |
| C2A |
C2 |
N1 |
C6 |
180.0 |
180.0 |
| C5 |
C4 |
C4A |
H4 |
312.4 |
0.1 |
| C4 |
C5 |
C5A |
H10 |
199.4 |
300.0 |
| C4 |
C5 |
C5A |
H11 |
318.9 |
60.0 |
| C4 |
C5 |
C6 |
H9 |
180.0 |
180.2 |
| C2 |
N1 |
C6 |
H9 |
180.0 |
179.9 |
| OP4 |
P |
OP3 |
OP2 |
245.6 |
240.0 |
| OP1 |
P |
OP3 |
OP2 |
135.9 |
120.0 |
| OP3 |
P |
OP2 |
H13 |
360.0 |
180.0 |
| C4 |
C5 |
C5A |
C6 |
180.5 |
179.8 |
| C5A |
C5 |
C6 |
H9 |
0.5 |
0.0 |
| OP4 |
C5A |
C5 |
H10 |
239.7 |
240.1 |
| OP4 |
C5A |
C5 |
H11 |
120.2 |
120.0 |
| H10 |
C5A |
C5 |
H11 |
240.5 |
239.9 |
| C4 |
C5 |
C6 |
C5A |
179.5 |
180.2 |
| N1 |
C6 |
C5 |
H9 |
180.0 |
180.3 |
| C4 |
C5 |
C6 |
N1 |
0.1 |
0.5 |
| C5 |
C6 |
N1 |
H9 |
180.0 |
179.7 |
| C5 |
C5A |
OP4 |
H10 |
120.2 |
120.0 |
| C5 |
C5A |
OP4 |
H11 |
239.8 |
240.0 |
| H10 |
C5A |
OP4 |
H11 |
119.5 |
120.0 |
| OP3 |
P |
OP4 |
OP2 |
118.5 |
120.0 |
| P |
OP4 |
C5A |
H10 |
75.7 |
60.0 |
| P |
OP4 |
C5A |
H11 |
316.1 |
300.0 |
| OP1 |
P |
OP4 |
OP2 |
240.8 |
240.0 |
| OP4 |
P |
OP2 |
H13 |
114.2 |
300.0 |
| OP3 |
P |
OP1 |
OP2 |
225.4 |
240.0 |
| OP4 |
P |
OP1 |
OP2 |
112.2 |
120.0 |
| OP1 |
P |
OP2 |
H13 |
222.8 |
60.0 |
| H1 |
OXT |
C |
CA |
180.6 |
180.3 |
| H2 |
CB |
CA |
N |
360.0 |
0.0 |
| CA |
CB |
H2 |
H3 |
180.0 |
179.9 |
| H3 |
CB |
CA |
N |
180.0 |
180.0 |
| CA |
CB |
H3 |
H2 |
180.0 |
180.1 |
| N |
C4A |
H4 |
C4 |
180.0 |
180.0 |
| H4 |
C4A |
C4 |
C5 |
312.4 |
0.1 |
| H5 |
O3 |
C3 |
C2 |
0.4 |
270.1 |
| H6 |
C2A |
C2 |
N1 |
0.0 |
270.1 |
| H7 |
C2A |
H6 |
H8 |
120.0 |
120.0 |
| H7 |
C2A |
C2 |
N1 |
120.0 |
30.1 |
| H6 |
C2A |
H7 |
H8 |
240.0 |
240.0 |
| H8 |
C2A |
C2 |
N1 |
240.0 |
150.1 |
| H6 |
C2A |
H8 |
H7 |
120.0 |
120.0 |
| C5 |
C5A |
H10 |
H11 |
119.2 |
120.1 |
| OP4 |
C5A |
H10 |
H11 |
240.7 |
240.0 |
| C5 |
C5A |
H11 |
H10 |
240.8 |
240.0 |
| OP4 |
C5A |
H11 |
H10 |
119.3 |
120.0 |
| H12 |
OP1 |
P |
OP2 |
134.6 |
60.0 |