Atom Nomenclature for 0JL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0JL

Atom Name (V3) Atom Name (V2)
CBF CBF
CBE CBE
CBB CBB
NBD NBD
S S
CBA CBA
NAZ NAZ
CAT CAT
CAS CAS
OBG OBG
CAY CAY
CAX CAX
CAW CAW
NAV NAV
NAU NAU
NAR NAR
CAP CAP
CAQ CAQ
CAO CAO
CAI CAI
CAH CAH
CAG CAG
CAN CAN
CAM CAM
CAL CAL
NAK NAK
CAJ CAJ
CAF CAF
OAE OAE
CAD CAD
CAC CAC
OAB OAB
CAA CAA
H1 H1
H2 H2
H3 H3
H4 H4
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23