PDB Chemical Component 0JC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0JC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PT1 N2 2.059 2.188
PT1 N1 2.064 2.186
N1 C1 1.505 1.467
N2 C2 1.478 1.468
C1 H3 1.100 1.100
C1 H4 1.100 1.100
C2 C1 1.515 1.544
C2 H5 1.100 1.100
C2 H6 1.100 1.101
PT1 I2   2.932
PT1 I1 2.613 2.930
I2 PT2   2.933
PT2 N3   2.186
PT2 N4   2.187
N3 C8   1.469
C8 C9   1.545
N4 C9   1.467
I1 PT2   2.929
C8 H51   1.100
C9 H61   1.100
C8 H7   1.100
C9 H8   1.100
N3 H9   1.000
N3 H10   1.000
N4 H11   1.000
N4 H12   1.000
N1 H1 1.000 1.000
N1 H14 1.000 1.000
N2 H2 1.000 1.000
N2 H16 1.000 1.000

Bond Angles for 0JC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 PT1 N2 81.8 82.2
PT1 N2 C2 106.0 106.2
N2 PT1 I2   134.7
N2 PT1 I1 179.2 125.7
PT1 N2 H2 110.3 110.3
PT1 N2 H16 110.3 110.3
PT1 N1 C1 110.5 105.7
N1 PT1 I2   128.3
N1 PT1 I1 97.4 132.2
PT1 N1 H1 109.2 110.4
PT1 N1 H14 109.2 110.4
N1 C1 H3 110.3 109.6
N1 C1 H4 110.4 109.5
C1 N1 H1 109.2 110.4
C1 N1 H14 109.2 110.4
N2 C2 C1 105.5 109.8
N2 C2 H5 110.5 109.4
N2 C2 H6 110.4 109.4
C2 N2 H2 110.3 110.3
C2 N2 H16 110.4 110.3
H3 C1 H4 109.5 109.4
C2 C1 H3 110.3 109.5
C2 C1 H4 110.4 109.6
H5 C2 H6 109.5 109.4
I1 PT1 I2   62.2
PT1 I2 PT2   117.7
PT1 I1 PT2   117.9
I2 PT2 N3   134.9
I2 PT2 N4   128.4
I1 PT2 I2   62.3
N3 PT2 N4   82.3
PT2 N3 C8   106.3
I1 PT2 N3   123.3
PT2 N3 H9   110.3
PT2 N3 H10   110.3
PT2 N4 C9   105.8
I1 PT2 N4   134.3
PT2 N4 H11   110.4
PT2 N4 H12   110.4
N3 C8 C9   110.0
N3 C8 H51   109.3
N3 C8 H7   109.3
C8 N3 H9   110.3
C8 N3 H10   110.3
N4 C9 C8   109.5
C9 C8 H51   109.4
C8 C9 H61   109.5
C9 C8 H7   109.4
C8 C9 H8   109.5
N4 C9 H61   109.5
N4 C9 H8   109.4
C9 N4 H11   110.4
C9 N4 H12   110.4
H51 C8 H7   109.5
H61 C9 H8   109.5
H9 N3 H10   109.4
H11 N4 H12   109.5
H1 N1 H14 109.4 109.5
H2 N2 H16 109.5 109.4

Torsion Angles for 0JC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N2 PT1 N1 C1 2.7 17.3
N1 PT1 N2 I2   138.1
N1 PT1 N2 I1 14.3 222.6
N2 PT1 N1 H1 122.9 136.7
N2 PT1 N1 H14 242.5 257.9
PT1 N2 C2 C1 305.5 319.2
PT1 N2 C2 H5 64.9 79.2
PT1 N2 C2 H6 186.2 199.1
C2 N2 PT1 H2 240.6 240.5
C2 N2 PT1 H16 119.5 119.5
I1 PT1 N2 I2   275.5
N2 PT1 I2 PT2   245.9
N2 PT1 I1 PT2   127.0
H2 N2 PT1 H16 238.9 239.0
N1 PT1 N2 C2 28.6 13.2
N2 PT1 N1 I2   217.2
N2 PT1 N1 I1 180.2 132.1
N1 PT1 N2 H2 148.0 132.7
N1 PT1 N2 H16 269.1 253.7
PT1 N1 C1 H3 86.8 75.8
PT1 N1 C1 H4 207.9 195.8
C1 N1 PT1 H1 239.8 240.6
C1 N1 PT1 H14 120.2 119.4
I1 PT1 N1 I2   85.1
N1 PT1 I2 PT2   123.4
N1 PT1 I1 PT2   242.2
H1 N1 PT1 H14 240.3 238.8
C1 N1 PT1 N2 2.7 17.3
C1 N1 PT1 I2   160.1
C1 N1 PT1 I1 182.5 245.2
PT1 N1 C1 H1 120.2 119.4
PT1 N1 C1 H14 239.8 240.6
N2 C2 C1 N1 57.2 59.9
H3 C1 N1 H4 238.9 239.9
C2 C1 N1 H3 240.6 240.0
C2 C1 N1 H4 119.5 120.0
H1 N1 C1 H14 119.7 121.2
C2 N2 PT1 I2   235.1
C2 N2 PT1 I1 14.3 150.6
PT1 N2 C2 H2 119.4 119.5
PT1 N2 C2 H16 240.5 240.5
N2 C2 C1 H3 297.7 299.9
N2 C2 C1 H4 176.6 179.8
H5 C2 N2 H6 238.7 240.1
H2 N2 C2 H16 121.1 121.0
N1 C1 H3 H4 121.7 120.1
H3 C1 N1 H1 326.6 316.4
H3 C1 N1 H14 207.0 195.2
C2 C1 H3 H4 238.3 239.8
N1 C1 H4 H3 238.4 239.8
H4 C1 N1 H1 87.8 76.5
H4 C1 N1 H14 328.1 315.2
C2 C1 H4 H3 121.6 120.1
N1 C1 C2 H3 119.4 120.0
N1 C1 C2 H4 240.6 240.1
C2 C1 N1 H1 207.2 196.4
C2 C1 N1 H14 87.6 75.2
N2 C2 C1 H5 119.4 120.1
N2 C2 C1 H6 240.6 239.9
C1 C2 N2 H2 186.1 199.7
C1 C2 N2 H16 65.0 78.7
H3 C1 C2 H4 121.1 120.1
N2 C2 H5 C1 243.7 239.7
N2 C2 H5 H6 121.8 119.9
H5 C2 N2 H2 305.5 319.7
H5 C2 N2 H16 184.4 198.7
H5 C2 C1 H3 178.4 179.8
H5 C2 C1 H4 57.2 59.8
N2 C2 H6 C1 116.3 120.3
N2 C2 H6 H5 238.2 240.1
H6 C2 N2 H2 66.7 79.6
H6 C2 N2 H16 305.6 318.6
H6 C2 C1 H3 57.1 59.9
H6 C2 C1 H4 296.0 299.9
N1 PT1 I2 N2   237.5
I2 PT1 N2 C2   235.1
N2 PT1 I2 I1   246.0
I2 PT1 N2 H2   354.6
I2 PT1 N2 H16   115.6
I2 PT1 N1 C1   160.1
N1 PT1 I2 I1   123.5
I2 PT1 N1 H1   279.5
I2 PT1 N1 H14   40.7
I2 PT1 I1 PT2   0.1
PT1 I2 PT2 N3   249.6
PT1 I2 PT2 N4   126.3
I1 PT2 I2 PT1   0.1
N1 PT1 I1 N2 345.7 115.2
I1 PT1 N2 C2 14.3 150.6
N2 PT1 I1 I2   126.9
I1 PT1 N2 H2 133.7 270.1
I1 PT1 N2 H16 254.8 31.1
I1 PT1 N1 C1 182.5 245.2
N1 PT1 I1 I2   242.1
I1 PT1 N1 H1 302.7 4.6
I1 PT1 N1 H14 62.3 125.8
I1 PT1 I2 PT2   359.9
PT1 I1 PT2 I2   359.9
PT1 I1 PT2 N3   127.4
PT1 I1 PT2 N4   242.0
N3 PT2 I2 N4   123.3
I2 PT2 N3 C8   234.4
I1 PT2 I2 N3   110.5
I2 PT2 N3 H9   353.9
I2 PT2 N3 H10   114.9
I2 PT2 N4 C9   160.2
I1 PT2 I2 N4   233.8
I2 PT2 N4 H11   279.6
I2 PT2 N4 H12   40.8
I2 PT2 N3 N4   221.4
I1 PT2 N3 I2   277.6
N3 PT2 N4 C9   16.9
I1 PT2 N3 N4   139.0
N3 PT2 N4 H11   136.4
N3 PT2 N4 H12   257.5
PT2 N3 C8 C9   319.7
PT2 N3 C8 H51   79.8
PT2 N3 C8 H7   199.6
C8 N3 PT2 H9   240.5
C8 N3 PT2 H10   119.5
H9 N3 PT2 H10   239.1
I2 PT2 N4 N3   143.3
I1 PT2 N4 I2   86.8
N4 PT2 N3 C8   13.1
I1 PT2 N4 N3   230.1
N4 PT2 N3 H9   132.6
N4 PT2 N3 H10   253.5
PT2 N4 C9 C8   316.6
PT2 N4 C9 H61   196.6
PT2 N4 C9 H8   76.6
C9 N4 PT2 H11   240.5
C9 N4 PT2 H12   119.4
H11 N4 PT2 H12   238.9
C8 N3 PT2 N4   13.1
I1 PT2 N3 C8   152.1
PT2 N3 C8 H9   119.5
PT2 N3 C8 H10   240.5
N4 C9 C8 N3   58.9
C9 C8 N3 H51   239.9
N3 C8 C9 H61   178.9
C9 C8 N3 H7   120.1
N3 C8 C9 H8   298.9
H51 C8 N3 H7   240.2
H9 N3 C8 H10   121.0
N3 C8 C9 H51   120.1
N3 C8 C9 H7   239.9
C9 C8 N3 H9   200.2
C9 C8 N3 H10   79.3
N4 C9 C8 H61   240.0
N4 C9 C8 H8   120.0
C8 C9 N4 H11   197.2
C8 C9 N4 H12   76.0
H51 C8 C9 H7   119.8
H61 C9 C8 H8   240.0
I1 PT2 N4 C9   247.0
PT2 N4 C9 H11   119.4
PT2 N4 C9 H12   240.6
N3 C8 C9 N4   58.9
N4 C9 C8 H51   298.8
C8 C9 N4 H61   120.0
N4 C9 C8 H7   179.0
C8 C9 N4 H8   240.0
H61 C9 N4 H8   120.0
H11 N4 C9 H12   121.2
PT2 I1 PT1 I2   0.1
PT1 I2 PT2 I1   0.1
I2 PT2 I1 N3   232.6
I2 PT2 I1 N4   117.9
N3 PT2 I1 N4   245.4
I1 PT2 N3 H9   271.6
I1 PT2 N3 H10   32.5
I1 PT2 N4 H11   6.4
I1 PT2 N4 H12   127.6
N3 C8 H51 C9   239.5
N3 C8 H51 H7   119.7
H51 C8 N3 H9   320.3
H51 C8 N3 H10   199.3
H51 C8 C9 H61   58.8
C9 C8 H51 H7   240.2
H51 C8 C9 H8   178.8
N4 C9 H61 C8   120.0
H61 C9 C8 H51   58.8
H61 C9 C8 H7   299.0
C8 C9 H61 H8   120.0
N4 C9 H61 H8   240.0
H61 C9 N4 H11   77.2
H61 C9 N4 H12   316.0
N3 C8 H7 C9   120.5
N3 C8 H7 H51   240.3
H7 C8 N3 H9   80.1
H7 C8 N3 H10   319.2
C9 C8 H7 H51   119.8
H7 C8 C9 H61   299.0
H7 C8 C9 H8   59.0
N4 C9 H8 C8   240.0
H8 C9 C8 H51   178.8
C8 C9 H8 H61   240.0
H8 C9 C8 H7   59.0
N4 C9 H8 H61   120.0
H8 C9 N4 H11   317.2
H8 C9 N4 H12   196.0
H9 N3 PT2 N4   132.6
PT2 N3 H9 C8   242.9
PT2 N3 H9 H10   121.4
H9 N3 C8 C9   200.2
H9 N3 C8 H51   320.3
H9 N3 C8 H7   80.1
C8 N3 H9 H10   238.6
H10 N3 PT2 N4   253.5
PT2 N3 H10 C8   117.1
PT2 N3 H10 H9   238.6
H10 N3 C8 C9   79.3
H10 N3 C8 H51   199.3
H10 N3 C8 H7   319.2
C8 N3 H10 H9   121.4
PT2 N4 H11 C9   243.4
PT2 N4 H11 H12   121.6
H11 N4 C9 C8   197.2
H11 N4 C9 H61   77.2
H11 N4 C9 H8   317.2
C9 N4 H11 H12   238.3
PT2 N4 H12 C9   116.6
PT2 N4 H12 H11   238.4
H12 N4 C9 C8   76.0
H12 N4 C9 H61   316.0
H12 N4 C9 H8   196.0
C9 N4 H12 H11   121.7
H1 N1 PT1 N2 122.9 136.7
PT1 N1 H1 C1 239.0 243.5
H1 N1 PT1 I2   279.5
H1 N1 PT1 I1 302.7 4.6
PT1 N1 H1 H14 119.5 121.7
H1 N1 C1 H3 326.6 316.4
H1 N1 C1 H4 87.8 76.5
C1 N1 H1 H14 240.5 238.3
H14 N1 PT1 N2 242.5 257.9
PT1 N1 H14 C1 121.0 116.5
H14 N1 PT1 I2   40.7
H14 N1 PT1 I1 62.3 125.8
PT1 N1 H14 H1 240.5 238.3
H14 N1 C1 H3 207.0 195.2
H14 N1 C1 H4 328.1 315.2
C1 N1 H14 H1 119.5 121.8
PT1 N2 H2 C2 243.2 243.0
H2 N2 PT1 I2   354.6
H2 N2 PT1 I1 133.7 270.1
PT1 N2 H2 H16 121.6 121.5
H2 N2 C2 C1 186.1 199.7
H2 N2 C2 H5 305.5 319.7
H2 N2 C2 H6 66.7 79.6
C2 N2 H2 H16 238.4 238.5
PT1 N2 H16 C2 116.8 117.0
H16 N2 PT1 I2   115.6
H16 N2 PT1 I1 254.8 31.1
PT1 N2 H16 H2 238.4 238.5
H16 N2 C2 C1 65.0 78.7
H16 N2 C2 H5 184.4 198.7
H16 N2 C2 H6 305.6 318.6
C2 N2 H16 H2 121.6 121.5