PDB Chemical Component 0JC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0JC
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
PT1 |
N2 |
2.059 |
2.188 |
PT1 |
N1 |
2.064 |
2.186 |
N1 |
C1 |
1.505 |
1.467 |
N2 |
C2 |
1.478 |
1.468 |
C1 |
H3 |
1.100 |
1.100 |
C1 |
H4 |
1.100 |
1.100 |
C2 |
C1 |
1.515 |
1.544 |
C2 |
H5 |
1.100 |
1.100 |
C2 |
H6 |
1.100 |
1.101 |
PT1 |
I2 |
|
2.932 |
PT1 |
I1 |
2.613 |
2.930 |
I2 |
PT2 |
|
2.933 |
PT2 |
N3 |
|
2.186 |
PT2 |
N4 |
|
2.187 |
N3 |
C8 |
|
1.469 |
C8 |
C9 |
|
1.545 |
N4 |
C9 |
|
1.467 |
I1 |
PT2 |
|
2.929 |
C8 |
H51 |
|
1.100 |
C9 |
H61 |
|
1.100 |
C8 |
H7 |
|
1.100 |
C9 |
H8 |
|
1.100 |
N3 |
H9 |
|
1.000 |
N3 |
H10 |
|
1.000 |
N4 |
H11 |
|
1.000 |
N4 |
H12 |
|
1.000 |
N1 |
H1 |
1.000 |
1.000 |
N1 |
H14 |
1.000 |
1.000 |
N2 |
H2 |
1.000 |
1.000 |
N2 |
H16 |
1.000 |
1.000 |
Bond Angles for 0JC
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
PT1 |
N2 |
81.8 |
82.2 |
PT1 |
N2 |
C2 |
106.0 |
106.2 |
N2 |
PT1 |
I2 |
|
134.7 |
N2 |
PT1 |
I1 |
179.2 |
125.7 |
PT1 |
N2 |
H2 |
110.3 |
110.3 |
PT1 |
N2 |
H16 |
110.3 |
110.3 |
PT1 |
N1 |
C1 |
110.5 |
105.7 |
N1 |
PT1 |
I2 |
|
128.3 |
N1 |
PT1 |
I1 |
97.4 |
132.2 |
PT1 |
N1 |
H1 |
109.2 |
110.4 |
PT1 |
N1 |
H14 |
109.2 |
110.4 |
N1 |
C1 |
H3 |
110.3 |
109.6 |
N1 |
C1 |
H4 |
110.4 |
109.5 |
C1 |
N1 |
H1 |
109.2 |
110.4 |
C1 |
N1 |
H14 |
109.2 |
110.4 |
N2 |
C2 |
C1 |
105.5 |
109.8 |
N2 |
C2 |
H5 |
110.5 |
109.4 |
N2 |
C2 |
H6 |
110.4 |
109.4 |
C2 |
N2 |
H2 |
110.3 |
110.3 |
C2 |
N2 |
H16 |
110.4 |
110.3 |
H3 |
C1 |
H4 |
109.5 |
109.4 |
C2 |
C1 |
H3 |
110.3 |
109.5 |
C2 |
C1 |
H4 |
110.4 |
109.6 |
H5 |
C2 |
H6 |
109.5 |
109.4 |
I1 |
PT1 |
I2 |
|
62.2 |
PT1 |
I2 |
PT2 |
|
117.7 |
PT1 |
I1 |
PT2 |
|
117.9 |
I2 |
PT2 |
N3 |
|
134.9 |
I2 |
PT2 |
N4 |
|
128.4 |
I1 |
PT2 |
I2 |
|
62.3 |
N3 |
PT2 |
N4 |
|
82.3 |
PT2 |
N3 |
C8 |
|
106.3 |
I1 |
PT2 |
N3 |
|
123.3 |
PT2 |
N3 |
H9 |
|
110.3 |
PT2 |
N3 |
H10 |
|
110.3 |
PT2 |
N4 |
C9 |
|
105.8 |
I1 |
PT2 |
N4 |
|
134.3 |
PT2 |
N4 |
H11 |
|
110.4 |
PT2 |
N4 |
H12 |
|
110.4 |
N3 |
C8 |
C9 |
|
110.0 |
N3 |
C8 |
H51 |
|
109.3 |
N3 |
C8 |
H7 |
|
109.3 |
C8 |
N3 |
H9 |
|
110.3 |
C8 |
N3 |
H10 |
|
110.3 |
N4 |
C9 |
C8 |
|
109.5 |
C9 |
C8 |
H51 |
|
109.4 |
C8 |
C9 |
H61 |
|
109.5 |
C9 |
C8 |
H7 |
|
109.4 |
C8 |
C9 |
H8 |
|
109.5 |
N4 |
C9 |
H61 |
|
109.5 |
N4 |
C9 |
H8 |
|
109.4 |
C9 |
N4 |
H11 |
|
110.4 |
C9 |
N4 |
H12 |
|
110.4 |
H51 |
C8 |
H7 |
|
109.5 |
H61 |
C9 |
H8 |
|
109.5 |
H9 |
N3 |
H10 |
|
109.4 |
H11 |
N4 |
H12 |
|
109.5 |
H1 |
N1 |
H14 |
109.4 |
109.5 |
H2 |
N2 |
H16 |
109.5 |
109.4 |
Torsion Angles for 0JC
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
PT1 |
N1 |
C1 |
2.7 |
17.3 |
N1 |
PT1 |
N2 |
I2 |
|
138.1 |
N1 |
PT1 |
N2 |
I1 |
14.3 |
222.6 |
N2 |
PT1 |
N1 |
H1 |
122.9 |
136.7 |
N2 |
PT1 |
N1 |
H14 |
242.5 |
257.9 |
PT1 |
N2 |
C2 |
C1 |
305.5 |
319.2 |
PT1 |
N2 |
C2 |
H5 |
64.9 |
79.2 |
PT1 |
N2 |
C2 |
H6 |
186.2 |
199.1 |
C2 |
N2 |
PT1 |
H2 |
240.6 |
240.5 |
C2 |
N2 |
PT1 |
H16 |
119.5 |
119.5 |
I1 |
PT1 |
N2 |
I2 |
|
275.5 |
N2 |
PT1 |
I2 |
PT2 |
|
245.9 |
N2 |
PT1 |
I1 |
PT2 |
|
127.0 |
H2 |
N2 |
PT1 |
H16 |
238.9 |
239.0 |
N1 |
PT1 |
N2 |
C2 |
28.6 |
13.2 |
N2 |
PT1 |
N1 |
I2 |
|
217.2 |
N2 |
PT1 |
N1 |
I1 |
180.2 |
132.1 |
N1 |
PT1 |
N2 |
H2 |
148.0 |
132.7 |
N1 |
PT1 |
N2 |
H16 |
269.1 |
253.7 |
PT1 |
N1 |
C1 |
H3 |
86.8 |
75.8 |
PT1 |
N1 |
C1 |
H4 |
207.9 |
195.8 |
C1 |
N1 |
PT1 |
H1 |
239.8 |
240.6 |
C1 |
N1 |
PT1 |
H14 |
120.2 |
119.4 |
I1 |
PT1 |
N1 |
I2 |
|
85.1 |
N1 |
PT1 |
I2 |
PT2 |
|
123.4 |
N1 |
PT1 |
I1 |
PT2 |
|
242.2 |
H1 |
N1 |
PT1 |
H14 |
240.3 |
238.8 |
C1 |
N1 |
PT1 |
N2 |
2.7 |
17.3 |
C1 |
N1 |
PT1 |
I2 |
|
160.1 |
C1 |
N1 |
PT1 |
I1 |
182.5 |
245.2 |
PT1 |
N1 |
C1 |
H1 |
120.2 |
119.4 |
PT1 |
N1 |
C1 |
H14 |
239.8 |
240.6 |
N2 |
C2 |
C1 |
N1 |
57.2 |
59.9 |
H3 |
C1 |
N1 |
H4 |
238.9 |
239.9 |
C2 |
C1 |
N1 |
H3 |
240.6 |
240.0 |
C2 |
C1 |
N1 |
H4 |
119.5 |
120.0 |
H1 |
N1 |
C1 |
H14 |
119.7 |
121.2 |
C2 |
N2 |
PT1 |
I2 |
|
235.1 |
C2 |
N2 |
PT1 |
I1 |
14.3 |
150.6 |
PT1 |
N2 |
C2 |
H2 |
119.4 |
119.5 |
PT1 |
N2 |
C2 |
H16 |
240.5 |
240.5 |
N2 |
C2 |
C1 |
H3 |
297.7 |
299.9 |
N2 |
C2 |
C1 |
H4 |
176.6 |
179.8 |
H5 |
C2 |
N2 |
H6 |
238.7 |
240.1 |
H2 |
N2 |
C2 |
H16 |
121.1 |
121.0 |
N1 |
C1 |
H3 |
H4 |
121.7 |
120.1 |
H3 |
C1 |
N1 |
H1 |
326.6 |
316.4 |
H3 |
C1 |
N1 |
H14 |
207.0 |
195.2 |
C2 |
C1 |
H3 |
H4 |
238.3 |
239.8 |
N1 |
C1 |
H4 |
H3 |
238.4 |
239.8 |
H4 |
C1 |
N1 |
H1 |
87.8 |
76.5 |
H4 |
C1 |
N1 |
H14 |
328.1 |
315.2 |
C2 |
C1 |
H4 |
H3 |
121.6 |
120.1 |
N1 |
C1 |
C2 |
H3 |
119.4 |
120.0 |
N1 |
C1 |
C2 |
H4 |
240.6 |
240.1 |
C2 |
C1 |
N1 |
H1 |
207.2 |
196.4 |
C2 |
C1 |
N1 |
H14 |
87.6 |
75.2 |
N2 |
C2 |
C1 |
H5 |
119.4 |
120.1 |
N2 |
C2 |
C1 |
H6 |
240.6 |
239.9 |
C1 |
C2 |
N2 |
H2 |
186.1 |
199.7 |
C1 |
C2 |
N2 |
H16 |
65.0 |
78.7 |
H3 |
C1 |
C2 |
H4 |
121.1 |
120.1 |
N2 |
C2 |
H5 |
C1 |
243.7 |
239.7 |
N2 |
C2 |
H5 |
H6 |
121.8 |
119.9 |
H5 |
C2 |
N2 |
H2 |
305.5 |
319.7 |
H5 |
C2 |
N2 |
H16 |
184.4 |
198.7 |
H5 |
C2 |
C1 |
H3 |
178.4 |
179.8 |
H5 |
C2 |
C1 |
H4 |
57.2 |
59.8 |
N2 |
C2 |
H6 |
C1 |
116.3 |
120.3 |
N2 |
C2 |
H6 |
H5 |
238.2 |
240.1 |
H6 |
C2 |
N2 |
H2 |
66.7 |
79.6 |
H6 |
C2 |
N2 |
H16 |
305.6 |
318.6 |
H6 |
C2 |
C1 |
H3 |
57.1 |
59.9 |
H6 |
C2 |
C1 |
H4 |
296.0 |
299.9 |
N1 |
PT1 |
I2 |
N2 |
|
237.5 |
I2 |
PT1 |
N2 |
C2 |
|
235.1 |
N2 |
PT1 |
I2 |
I1 |
|
246.0 |
I2 |
PT1 |
N2 |
H2 |
|
354.6 |
I2 |
PT1 |
N2 |
H16 |
|
115.6 |
I2 |
PT1 |
N1 |
C1 |
|
160.1 |
N1 |
PT1 |
I2 |
I1 |
|
123.5 |
I2 |
PT1 |
N1 |
H1 |
|
279.5 |
I2 |
PT1 |
N1 |
H14 |
|
40.7 |
I2 |
PT1 |
I1 |
PT2 |
|
0.1 |
PT1 |
I2 |
PT2 |
N3 |
|
249.6 |
PT1 |
I2 |
PT2 |
N4 |
|
126.3 |
I1 |
PT2 |
I2 |
PT1 |
|
0.1 |
N1 |
PT1 |
I1 |
N2 |
345.7 |
115.2 |
I1 |
PT1 |
N2 |
C2 |
14.3 |
150.6 |
N2 |
PT1 |
I1 |
I2 |
|
126.9 |
I1 |
PT1 |
N2 |
H2 |
133.7 |
270.1 |
I1 |
PT1 |
N2 |
H16 |
254.8 |
31.1 |
I1 |
PT1 |
N1 |
C1 |
182.5 |
245.2 |
N1 |
PT1 |
I1 |
I2 |
|
242.1 |
I1 |
PT1 |
N1 |
H1 |
302.7 |
4.6 |
I1 |
PT1 |
N1 |
H14 |
62.3 |
125.8 |
I1 |
PT1 |
I2 |
PT2 |
|
359.9 |
PT1 |
I1 |
PT2 |
I2 |
|
359.9 |
PT1 |
I1 |
PT2 |
N3 |
|
127.4 |
PT1 |
I1 |
PT2 |
N4 |
|
242.0 |
N3 |
PT2 |
I2 |
N4 |
|
123.3 |
I2 |
PT2 |
N3 |
C8 |
|
234.4 |
I1 |
PT2 |
I2 |
N3 |
|
110.5 |
I2 |
PT2 |
N3 |
H9 |
|
353.9 |
I2 |
PT2 |
N3 |
H10 |
|
114.9 |
I2 |
PT2 |
N4 |
C9 |
|
160.2 |
I1 |
PT2 |
I2 |
N4 |
|
233.8 |
I2 |
PT2 |
N4 |
H11 |
|
279.6 |
I2 |
PT2 |
N4 |
H12 |
|
40.8 |
I2 |
PT2 |
N3 |
N4 |
|
221.4 |
I1 |
PT2 |
N3 |
I2 |
|
277.6 |
N3 |
PT2 |
N4 |
C9 |
|
16.9 |
I1 |
PT2 |
N3 |
N4 |
|
139.0 |
N3 |
PT2 |
N4 |
H11 |
|
136.4 |
N3 |
PT2 |
N4 |
H12 |
|
257.5 |
PT2 |
N3 |
C8 |
C9 |
|
319.7 |
PT2 |
N3 |
C8 |
H51 |
|
79.8 |
PT2 |
N3 |
C8 |
H7 |
|
199.6 |
C8 |
N3 |
PT2 |
H9 |
|
240.5 |
C8 |
N3 |
PT2 |
H10 |
|
119.5 |
H9 |
N3 |
PT2 |
H10 |
|
239.1 |
I2 |
PT2 |
N4 |
N3 |
|
143.3 |
I1 |
PT2 |
N4 |
I2 |
|
86.8 |
N4 |
PT2 |
N3 |
C8 |
|
13.1 |
I1 |
PT2 |
N4 |
N3 |
|
230.1 |
N4 |
PT2 |
N3 |
H9 |
|
132.6 |
N4 |
PT2 |
N3 |
H10 |
|
253.5 |
PT2 |
N4 |
C9 |
C8 |
|
316.6 |
PT2 |
N4 |
C9 |
H61 |
|
196.6 |
PT2 |
N4 |
C9 |
H8 |
|
76.6 |
C9 |
N4 |
PT2 |
H11 |
|
240.5 |
C9 |
N4 |
PT2 |
H12 |
|
119.4 |
H11 |
N4 |
PT2 |
H12 |
|
238.9 |
C8 |
N3 |
PT2 |
N4 |
|
13.1 |
I1 |
PT2 |
N3 |
C8 |
|
152.1 |
PT2 |
N3 |
C8 |
H9 |
|
119.5 |
PT2 |
N3 |
C8 |
H10 |
|
240.5 |
N4 |
C9 |
C8 |
N3 |
|
58.9 |
C9 |
C8 |
N3 |
H51 |
|
239.9 |
N3 |
C8 |
C9 |
H61 |
|
178.9 |
C9 |
C8 |
N3 |
H7 |
|
120.1 |
N3 |
C8 |
C9 |
H8 |
|
298.9 |
H51 |
C8 |
N3 |
H7 |
|
240.2 |
H9 |
N3 |
C8 |
H10 |
|
121.0 |
N3 |
C8 |
C9 |
H51 |
|
120.1 |
N3 |
C8 |
C9 |
H7 |
|
239.9 |
C9 |
C8 |
N3 |
H9 |
|
200.2 |
C9 |
C8 |
N3 |
H10 |
|
79.3 |
N4 |
C9 |
C8 |
H61 |
|
240.0 |
N4 |
C9 |
C8 |
H8 |
|
120.0 |
C8 |
C9 |
N4 |
H11 |
|
197.2 |
C8 |
C9 |
N4 |
H12 |
|
76.0 |
H51 |
C8 |
C9 |
H7 |
|
119.8 |
H61 |
C9 |
C8 |
H8 |
|
240.0 |
I1 |
PT2 |
N4 |
C9 |
|
247.0 |
PT2 |
N4 |
C9 |
H11 |
|
119.4 |
PT2 |
N4 |
C9 |
H12 |
|
240.6 |
N3 |
C8 |
C9 |
N4 |
|
58.9 |
N4 |
C9 |
C8 |
H51 |
|
298.8 |
C8 |
C9 |
N4 |
H61 |
|
120.0 |
N4 |
C9 |
C8 |
H7 |
|
179.0 |
C8 |
C9 |
N4 |
H8 |
|
240.0 |
H61 |
C9 |
N4 |
H8 |
|
120.0 |
H11 |
N4 |
C9 |
H12 |
|
121.2 |
PT2 |
I1 |
PT1 |
I2 |
|
0.1 |
PT1 |
I2 |
PT2 |
I1 |
|
0.1 |
I2 |
PT2 |
I1 |
N3 |
|
232.6 |
I2 |
PT2 |
I1 |
N4 |
|
117.9 |
N3 |
PT2 |
I1 |
N4 |
|
245.4 |
I1 |
PT2 |
N3 |
H9 |
|
271.6 |
I1 |
PT2 |
N3 |
H10 |
|
32.5 |
I1 |
PT2 |
N4 |
H11 |
|
6.4 |
I1 |
PT2 |
N4 |
H12 |
|
127.6 |
N3 |
C8 |
H51 |
C9 |
|
239.5 |
N3 |
C8 |
H51 |
H7 |
|
119.7 |
H51 |
C8 |
N3 |
H9 |
|
320.3 |
H51 |
C8 |
N3 |
H10 |
|
199.3 |
H51 |
C8 |
C9 |
H61 |
|
58.8 |
C9 |
C8 |
H51 |
H7 |
|
240.2 |
H51 |
C8 |
C9 |
H8 |
|
178.8 |
N4 |
C9 |
H61 |
C8 |
|
120.0 |
H61 |
C9 |
C8 |
H51 |
|
58.8 |
H61 |
C9 |
C8 |
H7 |
|
299.0 |
C8 |
C9 |
H61 |
H8 |
|
120.0 |
N4 |
C9 |
H61 |
H8 |
|
240.0 |
H61 |
C9 |
N4 |
H11 |
|
77.2 |
H61 |
C9 |
N4 |
H12 |
|
316.0 |
N3 |
C8 |
H7 |
C9 |
|
120.5 |
N3 |
C8 |
H7 |
H51 |
|
240.3 |
H7 |
C8 |
N3 |
H9 |
|
80.1 |
H7 |
C8 |
N3 |
H10 |
|
319.2 |
C9 |
C8 |
H7 |
H51 |
|
119.8 |
H7 |
C8 |
C9 |
H61 |
|
299.0 |
H7 |
C8 |
C9 |
H8 |
|
59.0 |
N4 |
C9 |
H8 |
C8 |
|
240.0 |
H8 |
C9 |
C8 |
H51 |
|
178.8 |
C8 |
C9 |
H8 |
H61 |
|
240.0 |
H8 |
C9 |
C8 |
H7 |
|
59.0 |
N4 |
C9 |
H8 |
H61 |
|
120.0 |
H8 |
C9 |
N4 |
H11 |
|
317.2 |
H8 |
C9 |
N4 |
H12 |
|
196.0 |
H9 |
N3 |
PT2 |
N4 |
|
132.6 |
PT2 |
N3 |
H9 |
C8 |
|
242.9 |
PT2 |
N3 |
H9 |
H10 |
|
121.4 |
H9 |
N3 |
C8 |
C9 |
|
200.2 |
H9 |
N3 |
C8 |
H51 |
|
320.3 |
H9 |
N3 |
C8 |
H7 |
|
80.1 |
C8 |
N3 |
H9 |
H10 |
|
238.6 |
H10 |
N3 |
PT2 |
N4 |
|
253.5 |
PT2 |
N3 |
H10 |
C8 |
|
117.1 |
PT2 |
N3 |
H10 |
H9 |
|
238.6 |
H10 |
N3 |
C8 |
C9 |
|
79.3 |
H10 |
N3 |
C8 |
H51 |
|
199.3 |
H10 |
N3 |
C8 |
H7 |
|
319.2 |
C8 |
N3 |
H10 |
H9 |
|
121.4 |
PT2 |
N4 |
H11 |
C9 |
|
243.4 |
PT2 |
N4 |
H11 |
H12 |
|
121.6 |
H11 |
N4 |
C9 |
C8 |
|
197.2 |
H11 |
N4 |
C9 |
H61 |
|
77.2 |
H11 |
N4 |
C9 |
H8 |
|
317.2 |
C9 |
N4 |
H11 |
H12 |
|
238.3 |
PT2 |
N4 |
H12 |
C9 |
|
116.6 |
PT2 |
N4 |
H12 |
H11 |
|
238.4 |
H12 |
N4 |
C9 |
C8 |
|
76.0 |
H12 |
N4 |
C9 |
H61 |
|
316.0 |
H12 |
N4 |
C9 |
H8 |
|
196.0 |
C9 |
N4 |
H12 |
H11 |
|
121.7 |
H1 |
N1 |
PT1 |
N2 |
122.9 |
136.7 |
PT1 |
N1 |
H1 |
C1 |
239.0 |
243.5 |
H1 |
N1 |
PT1 |
I2 |
|
279.5 |
H1 |
N1 |
PT1 |
I1 |
302.7 |
4.6 |
PT1 |
N1 |
H1 |
H14 |
119.5 |
121.7 |
H1 |
N1 |
C1 |
H3 |
326.6 |
316.4 |
H1 |
N1 |
C1 |
H4 |
87.8 |
76.5 |
C1 |
N1 |
H1 |
H14 |
240.5 |
238.3 |
H14 |
N1 |
PT1 |
N2 |
242.5 |
257.9 |
PT1 |
N1 |
H14 |
C1 |
121.0 |
116.5 |
H14 |
N1 |
PT1 |
I2 |
|
40.7 |
H14 |
N1 |
PT1 |
I1 |
62.3 |
125.8 |
PT1 |
N1 |
H14 |
H1 |
240.5 |
238.3 |
H14 |
N1 |
C1 |
H3 |
207.0 |
195.2 |
H14 |
N1 |
C1 |
H4 |
328.1 |
315.2 |
C1 |
N1 |
H14 |
H1 |
119.5 |
121.8 |
PT1 |
N2 |
H2 |
C2 |
243.2 |
243.0 |
H2 |
N2 |
PT1 |
I2 |
|
354.6 |
H2 |
N2 |
PT1 |
I1 |
133.7 |
270.1 |
PT1 |
N2 |
H2 |
H16 |
121.6 |
121.5 |
H2 |
N2 |
C2 |
C1 |
186.1 |
199.7 |
H2 |
N2 |
C2 |
H5 |
305.5 |
319.7 |
H2 |
N2 |
C2 |
H6 |
66.7 |
79.6 |
C2 |
N2 |
H2 |
H16 |
238.4 |
238.5 |
PT1 |
N2 |
H16 |
C2 |
116.8 |
117.0 |
H16 |
N2 |
PT1 |
I2 |
|
115.6 |
H16 |
N2 |
PT1 |
I1 |
254.8 |
31.1 |
PT1 |
N2 |
H16 |
H2 |
238.4 |
238.5 |
H16 |
N2 |
C2 |
C1 |
65.0 |
78.7 |
H16 |
N2 |
C2 |
H5 |
184.4 |
198.7 |
H16 |
N2 |
C2 |
H6 |
305.6 |
318.6 |
C2 |
N2 |
H16 |
H2 |
121.6 |
121.5 |