PDB Chemical Component 0J9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0J9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.381 |
1.321 |
| N1 |
C6 |
1.337 |
1.330 |
| NAD |
C6 |
1.323 |
1.382 |
| C2 |
N3 |
1.388 |
1.314 |
| C6 |
C5 |
1.361 |
1.405 |
| N3 |
C4 |
1.345 |
1.333 |
| C5 |
C4 |
1.350 |
1.407 |
| C5 |
CAR |
1.359 |
1.463 |
| C4 |
NAW |
1.329 |
1.364 |
| CAI |
CAG |
1.389 |
1.390 |
| CAI |
CAQ |
1.387 |
1.385 |
| CAG |
CAK |
1.380 |
1.363 |
| CAA |
CAX |
1.540 |
1.530 |
| CAR |
CAQ |
1.369 |
1.479 |
| CAR |
NAO |
1.329 |
1.314 |
| CAK |
CAS |
1.386 |
1.405 |
| CAQ |
CAT |
1.418 |
1.416 |
| CAT |
CAS |
1.406 |
1.416 |
| CAT |
CAL |
1.396 |
1.402 |
| CAS |
CAJ |
1.388 |
1.406 |
| CAL |
CAF |
1.392 |
1.362 |
| CAJ |
CAE |
1.388 |
1.361 |
| NAW |
NAO |
1.234 |
1.399 |
| NAW |
CAX |
1.487 |
1.466 |
| CAE |
CAF |
1.391 |
1.394 |
| CAX |
CAC |
1.533 |
1.530 |
| CAX |
CAB |
1.541 |
1.530 |
| C2 |
H1 |
1.080 |
1.080 |
| CAA |
H2 |
1.100 |
1.090 |
| CAA |
H3 |
1.100 |
1.090 |
| CAA |
H4 |
1.101 |
1.090 |
| CAB |
H5 |
1.100 |
1.090 |
| CAB |
H6 |
1.100 |
1.090 |
| CAB |
H7 |
1.100 |
1.090 |
| CAC |
H8 |
1.100 |
1.090 |
| CAC |
H9 |
1.101 |
1.089 |
| CAC |
H10 |
1.099 |
1.090 |
| NAD |
H11 |
1.000 |
0.969 |
| NAD |
H12 |
1.000 |
0.970 |
| CAE |
H13 |
1.080 |
1.080 |
| CAF |
H14 |
1.080 |
1.080 |
| CAI |
H15 |
1.080 |
1.080 |
| CAJ |
H16 |
1.080 |
1.081 |
| CAK |
H17 |
1.080 |
1.080 |
| CAL |
H18 |
1.080 |
1.081 |
| CAG |
H19 |
1.079 |
1.079 |
Bond Angles for 0J9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
121.0 |
121.1 |
| N1 |
C2 |
N3 |
116.7 |
122.7 |
| N1 |
C2 |
H1 |
121.6 |
118.6 |
| N1 |
C6 |
C5 |
122.4 |
118.3 |
| C2 |
N3 |
C4 |
120.2 |
120.7 |
| N3 |
C2 |
H1 |
121.6 |
118.7 |
| C6 |
C5 |
CAR |
138.0 |
135.0 |
| N3 |
C4 |
NAW |
128.6 |
134.5 |
| C5 |
C4 |
NAW |
108.5 |
106.8 |
| C5 |
CAR |
CAQ |
130.7 |
126.4 |
| C5 |
CAR |
NAO |
105.4 |
107.3 |
| C4 |
NAW |
NAO |
107.8 |
109.5 |
| C4 |
NAW |
CAX |
126.6 |
125.2 |
| CAQ |
CAI |
CAG |
124.4 |
120.7 |
| CAI |
CAG |
CAK |
119.0 |
121.1 |
| CAG |
CAI |
H15 |
117.8 |
119.6 |
| CAI |
CAG |
H19 |
120.5 |
119.4 |
| CAI |
CAQ |
CAT |
115.2 |
119.3 |
| CAQ |
CAI |
H15 |
117.8 |
119.7 |
| CAG |
CAK |
H17 |
120.5 |
120.0 |
| CAA |
CAX |
NAW |
110.2 |
109.5 |
| CAA |
CAX |
CAC |
110.2 |
109.5 |
| CAA |
CAX |
CAB |
107.8 |
109.5 |
| CAX |
CAA |
H2 |
109.5 |
109.5 |
| CAX |
CAA |
H3 |
109.5 |
109.4 |
| CAX |
CAA |
H4 |
109.5 |
109.5 |
| CAR |
CAQ |
CAT |
124.6 |
120.4 |
| CAS |
CAK |
H17 |
120.6 |
120.0 |
| CAQ |
CAT |
CAS |
120.3 |
119.3 |
| CAT |
CAL |
H18 |
119.2 |
120.1 |
| CAS |
CAJ |
H16 |
119.8 |
120.2 |
| CAL |
CAF |
H14 |
120.0 |
119.5 |
| CAJ |
CAE |
H13 |
120.3 |
119.6 |
| CAF |
CAE |
H13 |
120.3 |
119.5 |
| CAE |
CAF |
H14 |
120.1 |
119.5 |
| CAX |
CAC |
H8 |
109.5 |
109.5 |
| CAX |
CAC |
H9 |
109.5 |
109.5 |
| CAX |
CAC |
H10 |
109.4 |
109.4 |
| CAX |
CAB |
H5 |
109.5 |
109.5 |
| CAX |
CAB |
H6 |
109.4 |
109.5 |
| CAX |
CAB |
H7 |
109.4 |
109.5 |
| H2 |
CAA |
H3 |
109.5 |
109.5 |
| H2 |
CAA |
H4 |
109.5 |
109.5 |
| H3 |
CAA |
H4 |
109.5 |
109.4 |
| H5 |
CAB |
H6 |
109.4 |
109.4 |
| H5 |
CAB |
H7 |
109.5 |
109.5 |
| H6 |
CAB |
H7 |
109.5 |
109.5 |
| H8 |
CAC |
H9 |
109.5 |
109.5 |
| H8 |
CAC |
H10 |
109.5 |
109.4 |
| H9 |
CAC |
H10 |
109.5 |
109.5 |
| H11 |
NAD |
H12 |
109.5 |
120.0 |
Torsion Angles for 0J9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
C5 |
359.3 |
360.0 |
| N1 |
C2 |
N3 |
C4 |
359.9 |
359.9 |
| N3 |
C2 |
N1 |
H1 |
180.0 |
180.1 |
| C6 |
N1 |
C2 |
N3 |
0.2 |
0.1 |
| C6 |
N1 |
C2 |
H1 |
180.2 |
180.0 |
| N1 |
C6 |
C5 |
CAR |
184.8 |
180.0 |
| NAD |
C6 |
C5 |
CAR |
4.5 |
0.0 |
| N3 |
C2 |
N1 |
C6 |
0.2 |
0.1 |
| N1 |
C2 |
N3 |
H1 |
180.0 |
179.9 |
| C2 |
N3 |
C4 |
NAW |
179.4 |
180.0 |
| C6 |
C5 |
C4 |
NAW |
180.0 |
180.0 |
| C6 |
C5 |
CAR |
CAQ |
349.7 |
360.0 |
| C6 |
C5 |
CAR |
NAO |
184.4 |
180.0 |
| C4 |
N3 |
C2 |
H1 |
180.0 |
180.0 |
| C5 |
C4 |
N3 |
NAW |
181.0 |
180.0 |
| N3 |
C4 |
NAW |
NAO |
176.7 |
180.0 |
| N3 |
C4 |
NAW |
CAX |
1.9 |
0.0 |
| N1 |
C6 |
C5 |
C4 |
1.0 |
360.0 |
| N3 |
C4 |
C5 |
NAW |
179.2 |
180.0 |
| C5 |
C4 |
NAW |
NAO |
355.8 |
360.0 |
| C5 |
C4 |
NAW |
CAX |
181.0 |
180.0 |
| CAR |
C5 |
C4 |
NAW |
357.3 |
0.0 |
| C5 |
CAR |
CAQ |
CAT |
231.1 |
235.5 |
| CAA |
CAX |
NAW |
C4 |
57.0 |
60.0 |
| CAG |
CAI |
CAQ |
CAT |
349.5 |
359.5 |
| CAQ |
CAI |
CAG |
H15 |
180.0 |
181.1 |
| CAI |
CAG |
CAK |
H17 |
176.7 |
179.0 |
| C5 |
CAR |
CAQ |
CAI |
40.4 |
54.9 |
| CAQ |
CAI |
CAG |
CAK |
8.8 |
1.1 |
| CAG |
CAI |
CAQ |
H15 |
180.0 |
178.9 |
| CAQ |
CAI |
CAG |
H19 |
188.8 |
180.0 |
| CAR |
CAQ |
CAI |
CAT |
189.8 |
180.5 |
| CAI |
CAQ |
CAT |
CAS |
7.2 |
360.0 |
| CAK |
CAG |
CAI |
H15 |
188.8 |
180.0 |
| CAI |
CAG |
CAK |
H19 |
180.0 |
178.9 |
| CAS |
CAK |
CAG |
H17 |
180.0 |
179.9 |
| C4 |
NAW |
CAX |
CAA |
57.0 |
60.0 |
| CAA |
CAX |
CAC |
H8 |
180.0 |
59.9 |
| CAA |
CAX |
CAC |
H9 |
300.0 |
180.0 |
| CAA |
CAX |
CAC |
H10 |
60.0 |
300.0 |
| CAA |
CAX |
CAB |
H5 |
180.0 |
60.0 |
| CAA |
CAX |
CAB |
H6 |
300.0 |
180.0 |
| CAA |
CAX |
CAB |
H7 |
60.0 |
300.0 |
| H2 |
CAA |
CAX |
H3 |
240.0 |
240.0 |
| H2 |
CAA |
CAX |
H4 |
120.0 |
120.0 |
| H3 |
CAA |
CAX |
H4 |
240.0 |
240.1 |
| C5 |
CAR |
CAQ |
NAO |
196.9 |
180.0 |
| CAR |
CAQ |
CAI |
CAG |
179.2 |
180.0 |
| CAI |
CAQ |
CAR |
CAT |
169.3 |
179.4 |
| CAR |
CAQ |
CAI |
H15 |
359.2 |
1.1 |
| CAR |
CAQ |
CAT |
CAS |
176.9 |
179.4 |
| C5 |
CAR |
NAO |
CAQ |
166.8 |
180.0 |
| C4 |
NAW |
NAO |
CAR |
9.8 |
360.0 |
| CAI |
CAG |
CAK |
CAS |
356.7 |
358.9 |
| CAG |
CAK |
CAS |
H17 |
180.0 |
180.1 |
| CAQ |
CAT |
CAS |
CAK |
357.3 |
0.0 |
| CAK |
CAS |
CAJ |
H16 |
0.3 |
359.9 |
| CAT |
CAQ |
CAI |
CAG |
349.5 |
359.5 |
| CAT |
CAQ |
CAI |
H15 |
169.5 |
180.6 |
| CAQ |
CAT |
CAL |
H18 |
2.8 |
359.7 |
| CAT |
CAS |
CAK |
H17 |
180.6 |
180.4 |
| CAS |
CAT |
CAL |
H18 |
180.3 |
179.5 |
| CAT |
CAS |
CAJ |
H16 |
180.2 |
179.5 |
| CAI |
CAQ |
CAT |
CAL |
184.6 |
179.8 |
| CAT |
CAL |
CAF |
H14 |
179.6 |
180.0 |
| CAS |
CAJ |
CAE |
H13 |
179.6 |
180.1 |
| CAL |
CAF |
CAE |
H13 |
180.5 |
180.1 |
| CAE |
CAF |
CAL |
H14 |
180.0 |
180.0 |
| CAF |
CAE |
CAJ |
H13 |
180.0 |
179.8 |
| CAJ |
CAE |
CAF |
H14 |
180.5 |
180.3 |
| C4 |
NAW |
NAO |
CAX |
185.1 |
180.0 |
| CAA |
CAX |
NAW |
NAO |
243.1 |
240.0 |
| C4 |
NAW |
CAX |
NAO |
173.9 |
180.0 |
| CAA |
CAX |
NAW |
CAC |
121.7 |
240.0 |
| CAA |
CAX |
NAW |
CAB |
241.8 |
120.0 |
| NAW |
CAX |
CAA |
H2 |
180.0 |
60.0 |
| NAW |
CAX |
CAA |
H3 |
300.0 |
180.0 |
| NAW |
CAX |
CAA |
H4 |
60.0 |
300.0 |
| NAW |
CAX |
CAC |
H8 |
301.7 |
299.9 |
| NAW |
CAX |
CAC |
H9 |
61.7 |
60.0 |
| NAW |
CAX |
CAC |
H10 |
181.7 |
180.0 |
| NAW |
CAX |
CAB |
H5 |
60.3 |
180.0 |
| NAW |
CAX |
CAB |
H6 |
180.3 |
300.0 |
| NAW |
CAX |
CAB |
H7 |
300.3 |
60.0 |
| CAL |
CAF |
CAE |
H14 |
180.0 |
180.0 |
| CAJ |
CAE |
CAF |
H13 |
180.0 |
180.2 |
| C4 |
NAW |
CAX |
CAC |
295.4 |
180.0 |
| CAA |
CAX |
CAC |
NAW |
238.3 |
120.0 |
| CAA |
CAX |
CAC |
CAB |
118.4 |
240.0 |
| CAC |
CAX |
CAA |
H2 |
301.5 |
300.0 |
| CAC |
CAX |
CAA |
H3 |
61.5 |
60.1 |
| CAC |
CAX |
CAA |
H4 |
181.5 |
180.0 |
| CAC |
CAX |
CAB |
H5 |
299.9 |
300.0 |
| CAC |
CAX |
CAB |
H6 |
59.9 |
59.9 |
| CAC |
CAX |
CAB |
H7 |
179.9 |
180.0 |
| H8 |
CAC |
CAX |
H9 |
240.0 |
240.0 |
| H8 |
CAC |
CAX |
H10 |
120.0 |
119.9 |
| H9 |
CAC |
CAX |
H10 |
240.0 |
240.0 |
| C4 |
NAW |
CAX |
CAB |
175.3 |
300.0 |
| CAA |
CAX |
CAB |
NAW |
119.7 |
240.0 |
| CAA |
CAX |
CAB |
CAC |
240.1 |
120.0 |
| CAB |
CAX |
CAA |
H2 |
61.0 |
180.0 |
| CAB |
CAX |
CAA |
H3 |
181.0 |
300.0 |
| CAB |
CAX |
CAA |
H4 |
300.9 |
60.0 |
| H5 |
CAB |
CAX |
H6 |
240.0 |
240.0 |
| H5 |
CAB |
CAX |
H7 |
120.0 |
120.0 |
| H6 |
CAB |
CAX |
H7 |
240.0 |
240.0 |
| H1 |
C2 |
N1 |
C6 |
180.2 |
180.0 |
| N1 |
C2 |
H1 |
N3 |
180.0 |
180.1 |
| H1 |
C2 |
N3 |
C4 |
180.0 |
180.0 |
| H2 |
CAA |
CAX |
NAW |
180.0 |
60.0 |
| H2 |
CAA |
CAX |
CAC |
301.5 |
300.0 |
| H2 |
CAA |
CAX |
CAB |
61.0 |
180.0 |
| CAX |
CAA |
H2 |
H3 |
120.0 |
120.0 |
| CAX |
CAA |
H2 |
H4 |
240.0 |
240.0 |
| H3 |
CAA |
H2 |
H4 |
120.0 |
120.0 |
| H3 |
CAA |
CAX |
NAW |
300.0 |
180.0 |
| H3 |
CAA |
CAX |
CAC |
61.5 |
60.1 |
| H3 |
CAA |
CAX |
CAB |
181.0 |
300.0 |
| CAX |
CAA |
H3 |
H2 |
240.0 |
239.9 |
| CAX |
CAA |
H3 |
H4 |
120.0 |
120.0 |
| H2 |
CAA |
H3 |
H4 |
240.0 |
240.0 |
| H4 |
CAA |
CAX |
NAW |
60.0 |
300.0 |
| H4 |
CAA |
CAX |
CAC |
181.5 |
180.0 |
| H4 |
CAA |
CAX |
CAB |
300.9 |
60.0 |
| CAX |
CAA |
H4 |
H2 |
120.0 |
120.0 |
| CAX |
CAA |
H4 |
H3 |
240.0 |
240.0 |
| H2 |
CAA |
H4 |
H3 |
120.0 |
120.0 |
| CAX |
CAB |
H5 |
H6 |
120.0 |
120.0 |
| CAX |
CAB |
H5 |
H7 |
240.0 |
240.0 |
| H6 |
CAB |
H5 |
H7 |
120.0 |
120.0 |
| CAX |
CAB |
H6 |
H5 |
240.0 |
240.0 |
| CAX |
CAB |
H6 |
H7 |
120.0 |
120.0 |
| H5 |
CAB |
H6 |
H7 |
240.0 |
240.0 |
| CAX |
CAB |
H7 |
H5 |
120.0 |
120.0 |
| CAX |
CAB |
H7 |
H6 |
240.0 |
240.0 |
| H5 |
CAB |
H7 |
H6 |
120.0 |
120.0 |
| CAX |
CAC |
H8 |
H9 |
120.0 |
120.1 |
| CAX |
CAC |
H8 |
H10 |
240.0 |
240.1 |
| H9 |
CAC |
H8 |
H10 |
120.0 |
120.0 |
| CAX |
CAC |
H9 |
H8 |
239.9 |
239.9 |
| CAX |
CAC |
H9 |
H10 |
120.0 |
120.0 |
| H8 |
CAC |
H9 |
H10 |
240.0 |
240.0 |
| CAX |
CAC |
H10 |
H8 |
120.0 |
120.0 |
| CAX |
CAC |
H10 |
H9 |
240.0 |
240.0 |
| H8 |
CAC |
H10 |
H9 |
120.0 |
120.0 |
| H13 |
CAE |
CAF |
H14 |
0.5 |
0.1 |
| H14 |
CAF |
CAE |
H13 |
0.5 |
0.1 |
| CAQ |
CAI |
H15 |
CAG |
180.0 |
178.9 |
| H15 |
CAI |
CAG |
CAK |
188.8 |
180.0 |
| H15 |
CAI |
CAG |
H19 |
8.9 |
358.9 |
| H15 |
CAI |
CAQ |
CAT |
169.5 |
180.6 |
| H16 |
CAJ |
CAE |
H13 |
359.6 |
0.2 |
| H18 |
CAL |
CAF |
H14 |
359.5 |
0.0 |
| CAI |
CAG |
H19 |
CAK |
180.0 |
181.1 |
| H19 |
CAG |
CAI |
H15 |
8.9 |
358.9 |
| H19 |
CAG |
CAK |
H17 |
356.7 |
0.1 |