Atom Nomenclature for 0HZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0HZ

Atom Name (V3) Atom Name (V2)
N N1
CA C1
CB C2
CG C3
CD C4
C C5
O O1
N1 N2
CA1 C6
C1 C7
O1 O3
CB1 C8
CG1 C9
CD1 C10
NE N3
CZ C11
NH1 N4
NH2 N5
HA H2
HB2 H3
HB3 H4
HG2 H5
HG3 H6
HD2 H7
HD3 H8
H H10
HA1 H12
HB21 H13
HB31 H14
HG21 H15
HG31 H16
HD21 H17
HD31 H18
HE H19
HH11 H20
HH12 H21
HH21 H22
HH22 H23