PDB Chemical Component 0HY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0HY
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C9 |
1.423 |
1.368 |
N5 |
C9 |
1.468 |
1.361 |
N5 |
C2 |
1.406 |
1.354 |
C9 |
N2 |
1.400 |
1.315 |
O1 |
C2 |
1.378 |
1.218 |
C2 |
C1 |
1.448 |
1.462 |
N2 |
C6 |
1.365 |
1.335 |
C1 |
C6 |
1.373 |
1.407 |
C1 |
C7 |
1.504 |
1.414 |
C6 |
N4 |
1.428 |
1.365 |
C7 |
O4 |
1.368 |
1.221 |
C7 |
C4 |
1.481 |
1.422 |
N4 |
N3 |
1.347 |
1.398 |
C4 |
N3 |
1.294 |
1.300 |
C4 |
C11 |
1.519 |
1.508 |
C11 |
C10 |
1.501 |
1.530 |
C11 |
C8 |
1.502 |
1.529 |
C8 |
C3 |
1.496 |
1.507 |
C3 |
O3 |
1.253 |
1.342 |
C3 |
O2 |
1.262 |
1.208 |
O3 |
C5 |
1.375 |
1.452 |
N1 |
H1 |
1.000 |
0.970 |
N1 |
H2 |
1.000 |
0.970 |
C5 |
H3 |
1.100 |
1.089 |
C5 |
H4 |
1.100 |
1.091 |
C5 |
H5 |
1.100 |
1.090 |
C8 |
H6 |
1.100 |
1.090 |
C8 |
H7 |
1.100 |
1.090 |
C10 |
H8 |
1.100 |
1.090 |
C10 |
H9 |
1.100 |
1.091 |
C10 |
H10 |
1.100 |
1.090 |
N5 |
H11 |
1.000 |
0.971 |
C11 |
H12 |
1.100 |
1.090 |
N4 |
H14 |
1.000 |
0.970 |
Bond Angles for 0HY
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
C9 |
N2 |
121.1 |
118.5 |
C9 |
N1 |
H1 |
120.0 |
120.0 |
C9 |
N1 |
H2 |
120.0 |
120.0 |
O1 |
C2 |
C1 |
121.6 |
121.2 |
C2 |
C1 |
C6 |
117.7 |
118.5 |
C2 |
C1 |
C7 |
125.7 |
122.2 |
C1 |
C6 |
N2 |
124.4 |
119.2 |
N2 |
C6 |
N4 |
118.6 |
121.7 |
C6 |
C1 |
C7 |
116.6 |
119.3 |
C1 |
C6 |
N4 |
116.9 |
119.1 |
C1 |
C7 |
O4 |
121.2 |
120.8 |
C1 |
C7 |
C4 |
119.8 |
118.5 |
C6 |
N4 |
H14 |
116.3 |
119.7 |
C7 |
C4 |
C11 |
119.2 |
119.7 |
C4 |
C11 |
C10 |
109.9 |
109.4 |
C4 |
C11 |
C8 |
116.3 |
109.5 |
C4 |
C11 |
H12 |
106.3 |
109.5 |
C11 |
C10 |
H8 |
109.5 |
109.5 |
C11 |
C10 |
H9 |
109.5 |
109.5 |
C11 |
C10 |
H10 |
109.5 |
109.5 |
C11 |
C8 |
H6 |
108.1 |
109.5 |
C11 |
C8 |
H7 |
108.0 |
109.5 |
C8 |
C3 |
O3 |
117.4 |
120.0 |
C8 |
C3 |
O2 |
120.9 |
120.0 |
O2 |
C3 |
O3 |
118.8 |
119.9 |
C3 |
O3 |
C5 |
118.3 |
117.1 |
O3 |
C5 |
H3 |
109.5 |
109.5 |
O3 |
C5 |
H4 |
109.4 |
109.4 |
O3 |
C5 |
H5 |
109.5 |
109.4 |
H1 |
N1 |
H2 |
120.0 |
120.0 |
H3 |
C5 |
H4 |
109.5 |
109.5 |
H3 |
C5 |
H5 |
109.5 |
109.5 |
H4 |
C5 |
H5 |
109.5 |
109.5 |
H6 |
C8 |
H7 |
109.5 |
109.5 |
H8 |
C10 |
H9 |
109.5 |
109.5 |
H8 |
C10 |
H10 |
109.5 |
109.5 |
H9 |
C10 |
H10 |
109.5 |
109.4 |
Torsion Angles for 0HY
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H1 |
N1 |
C9 |
H2 |
180.0 |
180.3 |
N5 |
C9 |
N1 |
H1 |
179.0 |
180.5 |
N5 |
C9 |
N1 |
H2 |
359.0 |
0.2 |
N2 |
C9 |
N1 |
H1 |
360.0 |
360.0 |
N2 |
C9 |
N1 |
H2 |
180.0 |
179.7 |
O1 |
C2 |
C1 |
C6 |
181.8 |
180.0 |
O1 |
C2 |
C1 |
C7 |
1.8 |
359.7 |
C2 |
C1 |
C6 |
N2 |
0.2 |
359.7 |
C6 |
C1 |
C2 |
C7 |
180.0 |
180.2 |
C2 |
C1 |
C6 |
N4 |
179.5 |
179.8 |
C2 |
C1 |
C7 |
O4 |
3.1 |
0.2 |
C2 |
C1 |
C7 |
C4 |
179.9 |
180.3 |
N1 |
C9 |
N2 |
C6 |
178.8 |
179.9 |
N2 |
C6 |
C1 |
C7 |
180.2 |
179.9 |
C1 |
C6 |
N2 |
N4 |
179.3 |
180.0 |
N2 |
C6 |
N4 |
H14 |
0.0 |
0.0 |
C2 |
C1 |
C6 |
C7 |
180.0 |
179.8 |
N2 |
C6 |
C1 |
N4 |
180.7 |
180.0 |
C6 |
C1 |
C7 |
O4 |
183.0 |
180.0 |
C6 |
C1 |
C7 |
C4 |
359.8 |
0.1 |
C1 |
C6 |
N4 |
H14 |
180.7 |
180.0 |
C2 |
C1 |
C7 |
C6 |
180.0 |
180.3 |
C7 |
C1 |
C6 |
N2 |
180.2 |
179.9 |
C7 |
C1 |
C6 |
N4 |
359.5 |
360.0 |
C1 |
C7 |
C4 |
C11 |
174.5 |
180.0 |
C1 |
C6 |
N4 |
N2 |
180.7 |
180.0 |
N4 |
C6 |
C1 |
C7 |
359.5 |
360.0 |
C1 |
C7 |
O4 |
C4 |
176.8 |
180.1 |
O4 |
C7 |
C4 |
C11 |
351.3 |
0.1 |
C1 |
C7 |
C4 |
O4 |
183.1 |
179.9 |
C7 |
C4 |
C11 |
C10 |
211.9 |
294.9 |
C7 |
C4 |
C11 |
C8 |
85.2 |
175.0 |
C7 |
C4 |
C11 |
H12 |
326.8 |
54.9 |
N2 |
C6 |
N4 |
N3 |
180.0 |
180.0 |
C1 |
C6 |
N4 |
N3 |
0.7 |
360.0 |
C1 |
C7 |
C4 |
N3 |
0.8 |
359.9 |
C4 |
C11 |
C10 |
H8 |
180.0 |
180.0 |
C4 |
C11 |
C10 |
H9 |
300.0 |
300.0 |
C4 |
C11 |
C10 |
H10 |
60.0 |
60.0 |
C4 |
C11 |
C8 |
H6 |
162.5 |
65.0 |
C4 |
C11 |
C8 |
H7 |
280.8 |
305.0 |
C4 |
C11 |
C10 |
C8 |
230.2 |
240.0 |
C4 |
C11 |
C10 |
H12 |
114.8 |
120.0 |
C10 |
C11 |
C8 |
H6 |
36.2 |
305.0 |
C10 |
C11 |
C8 |
H7 |
154.5 |
185.0 |
H8 |
C10 |
C11 |
H9 |
240.0 |
240.0 |
H8 |
C10 |
C11 |
H10 |
120.0 |
120.0 |
H9 |
C10 |
C11 |
H10 |
240.0 |
240.1 |
C4 |
C11 |
C8 |
C10 |
126.3 |
120.0 |
C4 |
C11 |
C8 |
H12 |
241.7 |
240.0 |
H6 |
C8 |
C11 |
H7 |
241.7 |
120.0 |
O2 |
C3 |
C8 |
O3 |
199.7 |
180.0 |
C8 |
C3 |
O3 |
C5 |
210.1 |
180.0 |
C8 |
C3 |
O3 |
O2 |
199.3 |
180.0 |
C3 |
O3 |
C5 |
H3 |
180.0 |
180.1 |
C3 |
O3 |
C5 |
H4 |
300.0 |
300.0 |
C3 |
O3 |
C5 |
H5 |
60.0 |
60.0 |
C8 |
C3 |
O2 |
O3 |
160.0 |
180.0 |
O2 |
C3 |
O3 |
C5 |
10.8 |
360.0 |
H3 |
C5 |
O3 |
H4 |
240.0 |
240.0 |
H3 |
C5 |
O3 |
H5 |
120.0 |
120.1 |
H4 |
C5 |
O3 |
H5 |
240.0 |
240.1 |
H1 |
N1 |
C9 |
N2 |
360.0 |
360.0 |
C9 |
N1 |
H1 |
H2 |
180.0 |
179.7 |
H2 |
N1 |
C9 |
N2 |
180.0 |
179.7 |
C9 |
N1 |
H2 |
H1 |
180.0 |
180.3 |
O3 |
C5 |
H3 |
H4 |
120.0 |
120.0 |
O3 |
C5 |
H3 |
H5 |
240.0 |
240.0 |
H4 |
C5 |
H3 |
H5 |
120.0 |
120.0 |
O3 |
C5 |
H4 |
H3 |
240.0 |
240.0 |
O3 |
C5 |
H4 |
H5 |
120.0 |
119.9 |
H3 |
C5 |
H4 |
H5 |
240.0 |
239.9 |
O3 |
C5 |
H5 |
H3 |
120.0 |
120.1 |
O3 |
C5 |
H5 |
H4 |
240.0 |
240.1 |
H3 |
C5 |
H5 |
H4 |
120.0 |
120.0 |
C11 |
C8 |
H6 |
H7 |
117.4 |
239.9 |
H6 |
C8 |
C3 |
O3 |
103.2 |
300.0 |
H6 |
C8 |
C3 |
O2 |
303.0 |
120.0 |
C11 |
C8 |
H7 |
H6 |
242.5 |
120.1 |
H7 |
C8 |
C3 |
O3 |
344.9 |
59.9 |
H7 |
C8 |
C3 |
O2 |
184.6 |
240.0 |
C11 |
C10 |
H8 |
H9 |
120.0 |
120.1 |
C11 |
C10 |
H8 |
H10 |
240.0 |
240.0 |
H9 |
C10 |
H8 |
H10 |
120.0 |
119.9 |
C11 |
C10 |
H9 |
H8 |
240.0 |
239.9 |
C11 |
C10 |
H9 |
H10 |
120.0 |
120.0 |
H8 |
C10 |
H9 |
H10 |
240.0 |
240.0 |
C11 |
C10 |
H10 |
H8 |
120.0 |
120.1 |
C11 |
C10 |
H10 |
H9 |
240.0 |
240.0 |
H8 |
C10 |
H10 |
H9 |
120.0 |
120.0 |
C4 |
C11 |
H12 |
C10 |
242.8 |
240.1 |
C4 |
C11 |
H12 |
C8 |
124.6 |
120.0 |
H12 |
C11 |
C10 |
H8 |
65.2 |
60.0 |
H12 |
C11 |
C10 |
H9 |
185.2 |
180.1 |
H12 |
C11 |
C10 |
H10 |
305.2 |
300.0 |
H12 |
C11 |
C8 |
H6 |
280.8 |
185.0 |
H12 |
C11 |
C8 |
H7 |
39.1 |
65.0 |