Atom Nomenclature for 0HG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0HG

Atom Name (V3) Atom Name (V2)
N N1
CA C1
C C2
O O1
CB C3
CG C4
CD C5
OE1 O2
OXT O3
CA1 C6
C1 C7
O1 O4
N1 N2
CB1 C8
SG S1
BR BR1
C11 C9
C2 C10
C3 C11
C4 C12
C5 C13
C6 C14
C7 C15
N2 N3
CA2 C16
C8 C17
O2 O6
OXT1 O7
H H1
H2 H2
HA H4
HB2 H5
HB3 H6
HG2 H7
HG3 H8
HXT H10
H3 H3
HA1 H11
H1 H13
HB21 H15
HB31 H16
HC2 H17
H31 H18
H5 H19
H6 H20
H71 H21
H72 H22
H4 H23
HA2 H25
HA3 H26
HXT1 H27