Atom Nomenclature for 0GS

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0GS

Atom Name (V3) Atom Name (V2)
BR1 BR1
C2 C2
C3 C3
C4 C4
C5 C5
C7 C7
C8 C8
C10 C10
C13 C13
C15 C15
C17 C17
C19 C19
S22 S22
C23 C23
O26 O26
O27 O27
N28 N28
C30 C30
C33 C33
C34 C34
C36 C36
C37 C37
C39 C39
C41 C41
C43 C43
F44 F44
F45 F45
C46 C46
O50 O50
F52 F52
N53 N53
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25