PDB Chemical Component 0GJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0GJ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.495 1.468
N H 1.001 1.009
N H2 1.000 1.009
CA C 1.534 1.507
CA CB 1.533 1.529
CA HA 1.100 1.089
C O 1.228 1.213
C N1 1.334 1.347
CB CG 1.526 1.530
CB HB2 1.100 1.090
CB HB3 1.100 1.090
CG CD 1.531 1.507
CG HG2 1.100 1.090
CG HG3 1.100 1.090
CD OE1 1.259 1.209
CD OE2 1.256 1.342
OE2 HE2 0.950 0.967
N1 CA1 1.452 1.464
N1 H1 1.000 0.971
CA1 C1 1.518 1.507
CA1 HA2 1.100 1.090
CA1 HA3 1.100 1.090
C1 O1 1.223 1.213
C1 N2 1.329 1.348
N2 CA2 1.466 1.464
N2 H3 1.000 0.970
CA2 C2 1.501 1.530
CA2 CB1 1.540 1.530
CA2 HA1 1.100 1.091
C2 O2 1.423 1.430
C2 C3 1.534 1.530
CB1 CG1 1.518 1.530
CB1 HB21 1.100 1.090
CB1 HB31 1.100 1.090
CG1 CD1 1.503 1.530
CG1 HG21 1.100 1.089
CG1 HG31 1.100 1.090
CD1 NE 1.465 1.465
CD1 HD2 1.100 1.090
CD1 HD3 1.100 1.090
NE CZ 1.334 1.368
NE HE 1.000 0.970
CZ NH1 1.331 1.331
CZ NH2 1.320 1.332
NH1 HH11 0.999 0.970
NH1 HH12 1.000 0.970
NH2 HH21 1.000 0.970
NH2 HH22 1.000 0.970
C3 H11 1.100 1.090
C3 H21 1.100 1.090
CL C3 1.493 1.803
C2 H27 1.100 1.090
O2 H28 0.950 0.967

Bond Angles for 0GJ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 109.5 111.1
CA N H2 109.5 111.0
N CA C 107.6 109.5
N CA CB 109.7 109.5
N CA HA 110.4 109.5
H N H2 109.5 111.0
C CA CB 108.8 109.4
C CA HA 111.2 109.5
CA C O 119.4 120.0
CA C N1 118.0 120.0
CB CA HA 109.1 109.5
CA CB CG 114.5 109.5
CA CB HB2 107.8 109.5
CA CB HB3 107.8 109.5
O C N1 122.5 120.0
C N1 CA1 120.4 120.0
C N1 H1 119.8 119.9
CG CB HB2 107.9 109.5
CG CB HB3 107.8 109.4
CB CG CD 113.4 109.5
CB CG HG2 108.2 109.5
CB CG HG3 108.2 109.4
HB2 CB HB3 111.1 109.5
CD CG HG2 108.2 109.5
CD CG HG3 108.2 109.5
CG CD OE1 119.2 120.0
CG CD OE2 117.8 120.0
HG2 CG HG3 110.7 109.5
OE1 CD OE2 123.0 120.0
CD OE2 HE2 109.5 117.0
CA1 N1 H1 119.8 120.1
N1 CA1 C1 107.9 109.5
N1 CA1 HA2 110.0 109.5
N1 CA1 HA3 110.0 109.5
C1 CA1 HA2 110.0 109.5
C1 CA1 HA3 110.0 109.4
CA1 C1 O1 119.3 120.0
CA1 C1 N2 117.8 120.0
HA2 CA1 HA3 108.9 109.5
O1 C1 N2 122.8 120.0
C1 N2 CA2 122.2 120.0
C1 N2 H3 118.9 120.0
CA2 N2 H3 118.9 120.0
N2 CA2 C2 103.5 109.5
N2 CA2 CB1 111.6 109.5
N2 CA2 HA1 111.7 109.5
C2 CA2 CB1 108.5 109.5
C2 CA2 HA1 114.7 109.4
CA2 C2 O2 102.1 109.5
CA2 C2 C3 111.7 109.5
CA2 C2 H27 115.8 109.5
CB1 CA2 HA1 107.0 109.4
CA2 CB1 CG1 114.8 109.5
CA2 CB1 HB21 107.7 109.5
CA2 CB1 HB31 107.7 109.5
O2 C2 C3 116.9 109.5
O2 C2 H27 110.4 109.4
C2 O2 H28 109.5 114.0
C2 C3 H11 105.1 109.5
C2 C3 H21 105.1 109.5
C3 C2 H27 100.7 109.5
CG1 CB1 HB21 107.7 109.5
CG1 CB1 HB31 107.7 109.5
CB1 CG1 CD1 111.3 109.5
CB1 CG1 HG21 108.8 109.5
CB1 CG1 HG31 108.8 109.5
HB21 CB1 HB31 111.2 109.5
CD1 CG1 HG21 108.9 109.5
CD1 CG1 HG31 108.9 109.5
CG1 CD1 NE 112.9 109.5
CG1 CD1 HD2 108.4 109.5
CG1 CD1 HD3 108.3 109.5
HG21 CG1 HG31 110.1 109.5
NE CD1 HD2 108.3 109.5
NE CD1 HD3 108.3 109.5
CD1 NE CZ 123.6 120.0
CD1 NE HE 118.2 120.0
HD2 CD1 HD3 110.6 109.5
CZ NE HE 118.2 120.0
NE CZ NH1 120.6 120.0
NE CZ NH2 120.3 120.0
NH1 CZ NH2 118.9 120.0
CZ NH1 HH11 120.0 120.0
CZ NH1 HH12 120.0 120.0
CZ NH2 HH21 120.0 120.0
CZ NH2 HH22 120.0 120.1
HH11 NH1 HH12 120.0 120.0
HH21 NH2 HH22 120.0 119.9
H11 C3 H21 113.4 109.5
CL C3 H11 105.1 109.5
CL C3 H21 105.1 109.4

Torsion Angles for 0GJ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 240.0 236.0
C CA N CB 118.2 120.0
C CA N HA 238.5 240.0
N CA C O 313.0 340.0
N CA C N1 130.0 160.0
CB CA N HA 120.3 120.0
N CA CB CG 325.2 294.9
N CA CB HB2 85.2 55.0
N CA CB HB3 205.2 175.0
CA N H H2 120.0 124.0
H N CA C 180.0 296.1
H N CA CB 61.8 176.1
H N CA HA 301.5 56.1
CA N H2 H 240.0 236.0
H2 N CA C 300.0 60.0
H2 N CA CB 181.8 300.0
H2 N CA HA 61.5 180.0
C CA N H 180.0 296.1
C CA N H2 300.0 60.0
N CA C CB 241.2 240.0
N CA C HA 121.0 120.0
CB CA C HA 239.7 240.0
C CA CB CG 207.7 175.0
C CA CB HB2 327.8 295.0
C CA CB HB3 87.8 55.0
O C CA N1 183.0 180.0
CA C N1 CA1 178.6 180.0
CA C N1 H1 358.6 0.0
CB CA N H 61.8 176.1
CB CA N H2 181.8 300.0
N CA CB C 117.4 120.0
N CA CB HA 239.0 240.0
C CA CB HA 121.6 120.0
CB CA C O 71.8 100.0
CB CA C N1 248.8 280.0
CG CB CA HB2 240.0 240.0
CG CB CA HB3 120.0 119.9
CA CB CG CD 145.9 180.0
CA CB CG HG2 265.9 300.0
CA CB CG HG3 25.8 60.0
HB2 CB CA HB3 240.0 240.0
HA CA N H 301.5 56.1
HA CA N H2 61.5 180.0
N CA HA C 240.7 240.0
N CA HA CB 120.6 120.0
C CA HA CB 239.9 240.0
HA CA C O 192.0 220.0
HA CA C N1 9.0 40.0
HA CA CB CG 86.2 55.0
HA CA CB HB2 206.2 175.0
HA CA CB HB3 326.2 295.0
O C CA CB 71.8 100.0
O C CA HA 192.0 220.0
CA C O N1 176.9 180.0
O C N1 CA1 355.5 0.0
O C N1 H1 175.5 180.0
N1 C CA CB 248.8 280.0
N1 C CA HA 9.0 40.0
CA C N1 O 183.1 180.0
CA1 N1 C H1 180.0 180.0
C N1 CA1 C1 293.3 180.0
C N1 CA1 HA2 53.3 300.0
C N1 CA1 HA3 173.2 60.0
CG CB CA HA 86.2 55.0
CA CB CG HB2 120.0 120.0
CA CB CG HB3 240.0 240.0
HB2 CB CG HB3 120.0 120.0
CD CG CB HG2 240.0 239.9
CD CG CB HG3 120.0 120.0
CB CG CD OE1 39.1 0.1
CB CG CD OE2 218.9 180.0
HG2 CG CB HG3 240.0 240.0
HB2 CB CA HA 206.2 175.0
CA CB HB2 CG 235.9 240.0
CA CB HB2 HB3 117.9 120.1
CG CB HB2 HB3 242.0 240.1
HB2 CB CG CD 25.9 59.9
HB2 CB CG HG2 145.9 180.0
HB2 CB CG HG3 265.8 300.0
HB3 CB CA HA 326.2 295.0
CA CB HB3 CG 124.1 120.0
CA CB HB3 HB2 242.1 239.9
CG CB HB3 HB2 118.0 120.0
HB3 CB CG CD 265.8 300.0
HB3 CB CG HG2 25.9 60.0
HB3 CB CG HG3 145.8 180.0
CD CG CB HB2 25.9 59.9
CD CG CB HB3 265.8 300.0
CB CG CD HG2 120.0 120.0
CB CG CD HG3 240.0 240.1
HG2 CG CD HG3 120.0 120.0
OE1 CD CG OE2 180.2 180.1
CG CD OE2 HE2 180.2 180.1
HG2 CG CB HB2 145.9 180.0
HG2 CG CB HB3 25.9 60.0
CB CG HG2 CD 236.8 239.9
CB CG HG2 HG3 118.4 119.9
CD CG HG2 HG3 241.6 240.0
HG2 CG CD OE1 279.1 240.0
HG2 CG CD OE2 98.9 60.0
HG3 CG CB HB2 265.8 300.0
HG3 CG CB HB3 145.8 180.0
CB CG HG3 CD 123.2 120.0
CB CG HG3 HG2 241.6 240.0
CD CG HG3 HG2 118.4 120.0
HG3 CG CD OE1 159.1 120.0
HG3 CG CD OE2 338.9 299.9
OE1 CD CG HG2 279.1 240.0
OE1 CD CG HG3 159.1 120.0
CG CD OE1 OE2 179.8 179.9
OE1 CD OE2 HE2 360.0 360.0
OE2 CD CG HG2 98.9 60.0
OE2 CD CG HG3 338.9 299.9
CG CD OE2 OE1 180.2 180.1
C N1 CA1 H1 180.0 180.0
C1 CA1 N1 HA2 240.0 240.0
C1 CA1 N1 HA3 120.0 120.0
N1 CA1 C1 O1 343.2 0.1
N1 CA1 C1 N2 159.7 180.0
HA2 CA1 N1 HA3 240.1 240.0
C N1 H1 CA1 180.0 180.0
H1 N1 CA1 C1 113.3 359.9
H1 N1 CA1 HA2 233.3 120.0
H1 N1 CA1 HA3 353.2 240.0
C1 CA1 N1 H1 113.3 359.9
N1 CA1 C1 HA2 120.0 120.1
N1 CA1 C1 HA3 240.0 240.0
HA2 CA1 C1 HA3 120.0 120.0
O1 C1 CA1 N2 183.5 180.1
CA1 C1 N2 CA2 179.6 180.1
CA1 C1 N2 H3 359.5 0.0
HA2 CA1 N1 H1 233.3 120.0
N1 CA1 HA2 C1 241.3 240.0
N1 CA1 HA2 HA3 120.6 120.0
C1 CA1 HA2 HA3 239.3 240.0
HA2 CA1 C1 O1 223.2 240.0
HA2 CA1 C1 N2 39.7 59.9
HA3 CA1 N1 H1 353.2 240.0
N1 CA1 HA3 C1 118.7 120.0
N1 CA1 HA3 HA2 239.4 240.0
C1 CA1 HA3 HA2 120.7 120.0
HA3 CA1 C1 O1 103.2 120.1
HA3 CA1 C1 N2 279.7 300.0
O1 C1 CA1 HA2 223.2 240.0
O1 C1 CA1 HA3 103.2 120.1
CA1 C1 O1 N2 176.3 179.9
O1 C1 N2 CA2 356.0 360.0
O1 C1 N2 H3 175.9 179.9
N2 C1 CA1 HA2 39.7 59.9
N2 C1 CA1 HA3 279.7 300.0
CA1 C1 N2 O1 183.6 180.1
CA2 N2 C1 H3 180.0 180.0
C1 N2 CA2 C2 236.7 275.0
C1 N2 CA2 CB1 120.2 155.0
C1 N2 CA2 HA1 0.5 35.0
C1 N2 CA2 H3 180.0 180.0
C2 CA2 N2 CB1 116.5 120.0
C2 CA2 N2 HA1 236.2 240.0
N2 CA2 C2 O2 175.8 180.0
N2 CA2 C2 C3 50.2 60.0
N2 CA2 C2 H27 295.8 299.9
CB1 CA2 N2 HA1 119.7 120.0
N2 CA2 CB1 CG1 293.7 295.0
N2 CA2 CB1 HB21 53.7 55.0
N2 CA2 CB1 HB31 173.7 175.0
C1 N2 H3 CA2 180.0 180.0
H3 N2 CA2 C2 56.7 95.1
H3 N2 CA2 CB1 300.2 335.0
H3 N2 CA2 HA1 180.5 215.0
C2 CA2 N2 H3 56.7 95.1
N2 CA2 C2 CB1 241.4 240.0
N2 CA2 C2 HA1 121.9 120.0
CB1 CA2 C2 HA1 240.5 240.0
C2 CA2 CB1 CG1 180.4 175.0
C2 CA2 CB1 HB21 300.4 295.0
C2 CA2 CB1 HB31 60.4 55.0
O2 C2 CA2 C3 125.6 120.0
O2 C2 CA2 H27 240.0 240.1
CA2 C2 O2 H28 180.0 59.9
CA2 C2 C3 H11 27.0 305.0
CA2 C2 C3 H21 147.0 65.0
C3 C2 CA2 H27 114.4 120.0
CB1 CA2 N2 H3 300.2 335.0
N2 CA2 CB1 C2 113.4 120.0
N2 CA2 CB1 HA1 237.5 240.0
C2 CA2 CB1 HA1 124.2 120.0
CB1 CA2 C2 O2 294.4 300.0
CB1 CA2 C2 C3 168.8 180.0
CB1 CA2 C2 H27 54.4 60.0
CG1 CB1 CA2 HB21 240.0 240.0
CG1 CB1 CA2 HB31 120.0 120.0
CA2 CB1 CG1 CD1 151.1 180.0
CA2 CB1 CG1 HG21 271.1 300.0
CA2 CB1 CG1 HG31 31.2 60.0
HB21 CB1 CA2 HB31 240.0 240.0
HA1 CA2 N2 H3 180.5 215.0
N2 CA2 HA1 C2 242.7 240.0
N2 CA2 HA1 CB1 122.4 120.0
C2 CA2 HA1 CB1 239.7 240.0
HA1 CA2 C2 O2 53.9 60.0
HA1 CA2 C2 C3 288.3 300.0
HA1 CA2 C2 H27 173.9 179.9
HA1 CA2 CB1 CG1 56.2 55.0
HA1 CA2 CB1 HB21 176.2 175.0
HA1 CA2 CB1 HB31 296.2 295.0
O2 C2 CA2 CB1 294.4 300.0
O2 C2 CA2 HA1 53.9 60.0
CA2 C2 O2 C3 237.9 240.0
CA2 C2 O2 H27 123.7 119.9
O2 C2 C3 H11 270.0 185.0
O2 C2 C3 H21 30.0 305.0
C3 C2 O2 H27 245.8 240.0
C3 C2 CA2 CB1 168.8 180.0
C3 C2 CA2 HA1 288.3 300.0
CA2 C2 C3 O2 117.0 120.0
CA2 C2 C3 H27 236.6 240.0
O2 C2 C3 H27 119.6 120.0
C3 C2 O2 H28 302.1 180.0
H11 C3 C2 H21 240.0 240.0
CL C3 C2 H11 240.0 240.0
CL C3 C2 H21 120.0 120.0
CG1 CB1 CA2 HA1 56.2 55.0
CA2 CB1 CG1 HB21 120.0 120.0
CA2 CB1 CG1 HB31 240.0 240.0
HB21 CB1 CG1 HB31 120.0 120.0
CD1 CG1 CB1 HG21 240.0 240.0
CD1 CG1 CB1 HG31 120.0 120.0
CB1 CG1 CD1 NE 185.8 180.0
CB1 CG1 CD1 HD2 305.8 300.0
CB1 CG1 CD1 HD3 65.8 60.0
HG21 CG1 CB1 HG31 240.0 240.0
HB21 CB1 CA2 HA1 176.2 175.0
CA2 CB1 HB21 CG1 235.6 240.0
CA2 CB1 HB21 HB31 117.8 120.0
CG1 CB1 HB21 HB31 242.2 240.0
HB21 CB1 CG1 CD1 31.2 60.0
HB21 CB1 CG1 HG21 151.2 180.0
HB21 CB1 CG1 HG31 271.2 300.0
HB31 CB1 CA2 HA1 296.2 295.0
CA2 CB1 HB31 CG1 124.4 120.0
CA2 CB1 HB31 HB21 242.2 240.0
CG1 CB1 HB31 HB21 117.8 120.0
HB31 CB1 CG1 CD1 271.1 300.0
HB31 CB1 CG1 HG21 31.1 60.0
HB31 CB1 CG1 HG31 151.1 180.0
CD1 CG1 CB1 HB21 31.2 60.0
CD1 CG1 CB1 HB31 271.1 300.0
CB1 CG1 CD1 HG21 120.0 120.0
CB1 CG1 CD1 HG31 240.0 240.0
HG21 CG1 CD1 HG31 120.1 120.0
NE CD1 CG1 HD2 240.0 240.0
NE CD1 CG1 HD3 120.0 120.0
CG1 CD1 NE CZ 189.8 180.0
CG1 CD1 NE HE 9.8 360.0
HD2 CD1 CG1 HD3 240.0 240.0
HG21 CG1 CB1 HB21 151.2 180.0
HG21 CG1 CB1 HB31 31.1 60.0
CB1 CG1 HG21 CD1 238.5 240.0
CB1 CG1 HG21 HG31 119.2 120.0
CD1 CG1 HG21 HG31 240.7 240.0
HG21 CG1 CD1 NE 65.8 60.0
HG21 CG1 CD1 HD2 185.8 180.0
HG21 CG1 CD1 HD3 305.9 300.0
HG31 CG1 CB1 HB21 271.2 300.0
HG31 CG1 CB1 HB31 151.1 180.0
CB1 CG1 HG31 CD1 121.5 120.0
CB1 CG1 HG31 HG21 240.8 240.0
CD1 CG1 HG31 HG21 119.3 120.0
HG31 CG1 CD1 NE 305.8 300.0
HG31 CG1 CD1 HD2 65.7 60.0
HG31 CG1 CD1 HD3 185.8 180.0
NE CD1 CG1 HG21 65.8 60.0
NE CD1 CG1 HG31 305.8 300.0
CG1 CD1 NE HD2 120.0 120.0
CG1 CD1 NE HD3 240.0 240.0
HD2 CD1 NE HD3 120.0 120.0
CZ NE CD1 HE 180.0 180.0
CD1 NE CZ NH1 359.2 0.0
CD1 NE CZ NH2 173.8 179.9
HD2 CD1 CG1 HG21 185.8 180.0
HD2 CD1 CG1 HG31 65.7 60.0
CG1 CD1 HD2 NE 237.2 240.0
CG1 CD1 HD2 HD3 118.6 120.0
NE CD1 HD2 HD3 241.4 240.0
HD2 CD1 NE CZ 69.8 60.0
HD2 CD1 NE HE 249.8 240.0
HD3 CD1 CG1 HG21 305.9 300.0
HD3 CD1 CG1 HG31 185.8 180.0
CG1 CD1 HD3 NE 122.8 120.0
CG1 CD1 HD3 HD2 241.4 240.0
NE CD1 HD3 HD2 118.6 120.0
HD3 CD1 NE CZ 309.7 300.0
HD3 CD1 NE HE 129.8 120.0
CZ NE CD1 HD2 69.8 60.0
CZ NE CD1 HD3 309.7 300.0
CD1 NE CZ HE 180.0 180.0
NH1 CZ NE NH2 185.4 180.1
NE CZ NH1 HH11 174.7 359.9
NE CZ NH1 HH12 354.7 180.0
NE CZ NH2 HH21 185.3 0.0
NE CZ NH2 HH22 5.3 179.9
HE NE CD1 HD2 249.8 240.0
HE NE CD1 HD3 129.8 120.0
CD1 NE HE CZ 180.0 180.0
HE NE CZ NH1 179.2 180.0
HE NE CZ NH2 353.8 360.0
NH1 CZ NE HE 179.2 180.0
NE CZ NH1 NH2 174.7 179.9
NH1 CZ NH2 HH21 360.0 180.0
NH1 CZ NH2 HH22 180.0 359.9
HH11 NH1 CZ HH12 180.0 180.0
NH2 CZ NE HE 353.8 360.0
NE CZ NH2 NH1 185.3 180.1
NH2 CZ NH1 HH11 0.0 180.0
NH2 CZ NH1 HH12 180.0 0.0
HH21 NH2 CZ HH22 180.0 180.1
HH11 NH1 CZ NH2 0.0 180.0
CZ NH1 HH11 HH12 180.0 180.0
HH12 NH1 CZ NH2 180.0 0.0
CZ NH1 HH12 HH11 180.0 180.0
CZ NH2 HH21 HH22 180.0 179.9
CZ NH2 HH22 HH21 180.0 180.1
C2 C3 H11 H21 114.3 120.0
H11 C3 C2 H27 150.4 65.0
CL C3 H11 H21 245.7 240.0
C2 C3 H21 H11 245.7 240.0
H21 C3 C2 H27 270.4 185.0
CL C3 H21 H11 114.3 120.0
C2 C3 CL H11 120.0 120.0
C2 C3 CL H21 240.0 240.0
CL C3 C2 H27 30.4 305.0
H11 C3 CL H21 120.0 120.0
H27 C2 CA2 CB1 54.4 60.0
H27 C2 CA2 HA1 173.9 179.9
CA2 C2 H27 O2 244.6 240.0
CA2 C2 H27 C3 120.5 120.0
O2 C2 H27 C3 235.9 240.0
H27 C2 O2 H28 56.3 300.0
H27 C2 C3 H11 150.4 65.0
H27 C2 C3 H21 270.4 185.0
H28 O2 C2 C3 302.1 180.0
H28 O2 C2 H27 56.3 300.0