Atom Nomenclature for 0GH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0GH

Atom Name (V3) Atom Name (V2)
CBK CBK
CBL CBL
CBM CBM
CBN CBN
NBO NBO
CBP CBP
OBV OBV
CBG CBG
CBH CBH
CBJ CBJ
OBI OBI
NBF NBF
CAX CAX
CAW CAW
CAY CAY
CAZ CAZ
CBA CBA
CBB CBB
CBC CBC
CBD CBD
CBE CBE
NAV NAV
CAT CAT
OAU OAU
CAP CAP
CAQ CAQ
CAO CAO
CAN CAN
NAE NAE
CBT CBT
SAB SAB
OAC OAC
OAD OAD
CAA CAA
CAS CAS
CAR CAR
CAL CAL
OAM OAM
NBQ NBQ
CBR CBR
CBS CBS
CAI CAI
CAH CAH
CAG CAG
CAF CAF
CAK CAK
CAJ CAJ
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48