PDB Chemical Component 0G8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0G8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2' |
S3' |
1.827 |
1.840 |
| C2' |
C1' |
1.531 |
1.556 |
| S3' |
C4' |
1.827 |
1.834 |
| O2 |
C2 |
1.226 |
1.220 |
| C2 |
N3 |
1.350 |
1.331 |
| C2 |
N1 |
1.387 |
1.345 |
| C1' |
N1 |
1.482 |
1.465 |
| C1' |
O4' |
1.437 |
1.434 |
| N3 |
C4 |
1.347 |
1.326 |
| N1 |
C6 |
1.406 |
1.363 |
| C4' |
O4' |
1.436 |
1.440 |
| C4' |
C5' |
1.527 |
1.530 |
| C4 |
N4 |
1.326 |
1.376 |
| C4 |
C5 |
1.386 |
1.411 |
| C6 |
C5 |
1.387 |
1.354 |
| C5' |
O5' |
1.428 |
1.430 |
| O5' |
PA |
1.607 |
1.610 |
| O2A |
PA |
1.477 |
1.480 |
| O2B |
PB |
1.477 |
1.480 |
| O3A |
PA |
1.610 |
1.610 |
| O3A |
PB |
1.612 |
1.610 |
| PA |
O1A |
1.481 |
1.610 |
| O3B |
PB |
1.610 |
1.610 |
| PB |
O1B |
1.610 |
1.610 |
| N4 |
H1 |
1.000 |
0.970 |
| N4 |
H2 |
1.000 |
0.970 |
| C5 |
H3 |
1.080 |
1.080 |
| C6 |
H4 |
1.080 |
1.079 |
| C1' |
H5 |
1.100 |
1.090 |
| C2' |
H6 |
1.100 |
1.089 |
| C2' |
H7 |
1.100 |
1.091 |
| C4' |
H8 |
1.100 |
1.091 |
| C5' |
H9 |
1.100 |
1.090 |
| C5' |
H10 |
1.100 |
1.090 |
| O1A |
H11 |
0.950 |
0.967 |
| O1B |
H12 |
0.950 |
0.966 |
| O3B |
H13 |
0.950 |
0.967 |
Bond Angles for 0G8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2' |
S3' |
C4' |
94.6 |
95.6 |
| S3' |
C2' |
H6 |
111.6 |
111.3 |
| S3' |
C2' |
H7 |
111.7 |
111.2 |
| C2' |
C1' |
H5 |
109.8 |
109.9 |
| S3' |
C4' |
C5' |
112.5 |
110.5 |
| S3' |
C4' |
H8 |
107.9 |
110.4 |
| O2 |
C2 |
N3 |
120.3 |
119.5 |
| O2 |
C2 |
N1 |
119.7 |
119.4 |
| N3 |
C2 |
N1 |
120.0 |
121.1 |
| C2 |
N3 |
C4 |
121.2 |
120.7 |
| C2 |
N1 |
C6 |
119.9 |
120.4 |
| O4' |
C1' |
H5 |
111.1 |
109.9 |
| N3 |
C4 |
N4 |
119.4 |
120.2 |
| N3 |
C4 |
C5 |
120.7 |
119.6 |
| N1 |
C6 |
H4 |
120.9 |
120.4 |
| C4' |
C5' |
O5' |
109.7 |
109.5 |
| C5' |
C4' |
H8 |
111.6 |
110.4 |
| C4' |
C5' |
H9 |
109.4 |
109.5 |
| C4' |
C5' |
H10 |
109.4 |
109.5 |
| N4 |
C4 |
C5 |
119.9 |
120.2 |
| C4 |
N4 |
H1 |
120.0 |
120.0 |
| C4 |
N4 |
H2 |
120.0 |
119.9 |
| C4 |
C5 |
H3 |
120.1 |
120.5 |
| C6 |
C5 |
H3 |
120.1 |
120.5 |
| C5' |
O5' |
PA |
119.4 |
123.0 |
| O5' |
C5' |
H9 |
109.4 |
109.4 |
| O5' |
C5' |
H10 |
109.4 |
109.4 |
| O5' |
PA |
O1A |
108.2 |
109.4 |
| O2A |
PA |
O1A |
117.5 |
109.5 |
| O3A |
PB |
O1B |
107.6 |
109.5 |
| PA |
O1A |
H11 |
109.5 |
114.0 |
| PB |
O1B |
H12 |
109.5 |
114.0 |
| H1 |
N4 |
H2 |
120.0 |
120.1 |
| H6 |
C2' |
H7 |
109.5 |
111.2 |
| H9 |
C5' |
H10 |
109.5 |
109.5 |
Torsion Angles for 0G8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S3' |
C2' |
C1' |
H5 |
81.1 |
78.7 |
| C2' |
S3' |
C4' |
C5' |
134.3 |
122.3 |
| C2' |
S3' |
C4' |
H8 |
257.8 |
244.7 |
| H6 |
C2' |
S3' |
H7 |
237.1 |
124.5 |
| O4' |
C1' |
C2' |
H5 |
239.0 |
240.4 |
| C4' |
S3' |
C2' |
H6 |
130.3 |
262.8 |
| C4' |
S3' |
C2' |
H7 |
253.3 |
138.3 |
| S3' |
C4' |
C5' |
O5' |
197.0 |
301.4 |
| C5' |
C4' |
S3' |
H8 |
236.5 |
237.5 |
| S3' |
C4' |
C5' |
H9 |
317.0 |
61.4 |
| S3' |
C4' |
C5' |
H10 |
77.0 |
181.5 |
| N3 |
C2 |
O2 |
N1 |
179.4 |
180.4 |
| O2 |
C2 |
N3 |
C4 |
180.8 |
179.9 |
| O2 |
C2 |
N1 |
C6 |
179.2 |
179.8 |
| O2 |
C2 |
N3 |
N1 |
180.6 |
179.6 |
| N3 |
C2 |
N1 |
C6 |
359.9 |
359.4 |
| C2 |
N3 |
C4 |
N4 |
179.7 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
359.9 |
360.0 |
| O2 |
C2 |
N1 |
N3 |
179.4 |
180.4 |
| N1 |
C2 |
N3 |
C4 |
0.1 |
0.3 |
| C2 |
N1 |
C6 |
H4 |
180.1 |
180.3 |
| C1' |
N1 |
C6 |
H4 |
0.7 |
360.0 |
| C2' |
C1' |
O4' |
H5 |
120.1 |
119.6 |
| C4 |
N3 |
C2 |
N1 |
0.1 |
0.3 |
| N4 |
C4 |
N3 |
C5 |
179.8 |
180.0 |
| N3 |
C4 |
N4 |
H1 |
360.0 |
0.0 |
| N3 |
C4 |
N4 |
H2 |
180.0 |
180.0 |
| N3 |
C4 |
C5 |
H3 |
180.1 |
180.0 |
| N1 |
C6 |
C5 |
H3 |
179.9 |
179.8 |
| C4' |
O4' |
C1' |
H5 |
298.0 |
289.7 |
| S3' |
C4' |
C5' |
H8 |
121.4 |
122.5 |
| C4' |
C5' |
O5' |
PA |
160.9 |
180.0 |
| O5' |
C5' |
C4' |
H9 |
240.0 |
240.0 |
| O5' |
C5' |
C4' |
H10 |
120.0 |
120.0 |
| H9 |
C5' |
C4' |
H10 |
240.0 |
239.9 |
| N3 |
C4 |
N4 |
C5 |
180.2 |
180.0 |
| N4 |
C4 |
C5 |
H3 |
0.3 |
0.0 |
| H1 |
N4 |
C4 |
H2 |
180.0 |
180.0 |
| N3 |
C4 |
C5 |
N4 |
179.8 |
180.0 |
| C5 |
C4 |
N4 |
H1 |
179.7 |
180.0 |
| C5 |
C4 |
N4 |
H2 |
359.8 |
360.0 |
| C6 |
C5 |
C4 |
H3 |
180.0 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
0.1 |
0.5 |
| C4 |
C5 |
C6 |
H3 |
180.0 |
180.0 |
| O5' |
C5' |
C4' |
H8 |
75.6 |
179.0 |
| C4' |
C5' |
O5' |
H9 |
120.0 |
120.0 |
| C4' |
C5' |
O5' |
H10 |
240.0 |
240.0 |
| C5' |
O5' |
PA |
O1A |
165.2 |
65.0 |
| H9 |
C5' |
O5' |
H10 |
120.0 |
120.0 |
| PA |
O5' |
C5' |
H9 |
40.9 |
60.0 |
| PA |
O5' |
C5' |
H10 |
280.9 |
300.0 |
| O2A |
PA |
O5' |
O1A |
231.2 |
240.0 |
| O5' |
PA |
O1A |
H11 |
236.3 |
60.0 |
| O5' |
PA |
O2A |
O1A |
123.4 |
120.0 |
| O2A |
PA |
O1A |
H11 |
0.0 |
180.0 |
| O2B |
PB |
O1B |
H12 |
0.0 |
180.0 |
| O3A |
PA |
O1A |
H11 |
125.9 |
300.1 |
| O3A |
PB |
O1B |
H12 |
234.5 |
60.0 |
| O3B |
PB |
O1B |
H12 |
122.2 |
300.0 |
| H1 |
N4 |
C4 |
C5 |
179.7 |
180.0 |
| C4 |
N4 |
H1 |
H2 |
180.0 |
180.0 |
| H2 |
N4 |
C4 |
C5 |
359.8 |
360.0 |
| C4 |
N4 |
H2 |
H1 |
180.0 |
180.0 |
| H4 |
C6 |
C5 |
H3 |
359.9 |
0.0 |
| H6 |
C2' |
S3' |
C4' |
130.3 |
262.8 |
| S3' |
C2' |
H6 |
H7 |
124.2 |
235.4 |
| H6 |
C2' |
C1' |
H5 |
322.6 |
196.5 |
| H7 |
C2' |
S3' |
C4' |
253.3 |
138.3 |
| S3' |
C2' |
H7 |
H6 |
235.9 |
124.6 |
| H7 |
C2' |
C1' |
H5 |
199.7 |
321.1 |
| S3' |
C4' |
H8 |
C5' |
236.0 |
237.5 |
| H8 |
C4' |
C5' |
O5' |
75.6 |
179.0 |
| H8 |
C4' |
C5' |
H9 |
195.6 |
298.9 |
| H8 |
C4' |
C5' |
H10 |
315.6 |
59.0 |
| C4' |
C5' |
H9 |
O5' |
239.8 |
240.0 |
| H9 |
C5' |
C4' |
H8 |
195.6 |
298.9 |
| C4' |
C5' |
H9 |
H10 |
119.9 |
120.1 |
| H9 |
C5' |
O5' |
PA |
40.9 |
60.0 |
| O5' |
C5' |
H9 |
H10 |
240.1 |
240.1 |
| C4' |
C5' |
H10 |
O5' |
120.2 |
120.0 |
| H10 |
C5' |
C4' |
H8 |
315.6 |
59.0 |
| C4' |
C5' |
H10 |
H9 |
240.1 |
239.9 |
| H10 |
C5' |
O5' |
PA |
280.9 |
300.0 |
| O5' |
C5' |
H10 |
H9 |
119.9 |
119.9 |