Atom Nomenclature for 0G7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0G7

Atom Name (V3) Atom Name (V2)
N N
CA CA
C C
O O
CB CB
CG CG
CD1 CD1
CD2 CD2
CE1 CE1
CE2 CE2
CZ CZ
N1 N1
CA1 CA1
C1 C1
O1 O1
CB1 CB1
CG1 CG1
CD CD
N2 N2
CA2 CA2
C2 C2
O2 O2
CB2 CB2
CG2 CG2
CD3 CD3
NE NE
CZ1 CZ1
NH1 NH1
NH2 NH2
C3 C3
CL1 CL1
HN HN
HNA HNA
HA HA
HB HB
HBA HBA
HD1 HD1
HD2 HD2
HE1 HE1
HE2 HE2
HZ HZ
HA1 HA1
HB1 HB1
HB1A HB1A
HG1 HG1
H31 H31
HD HD
H29 H29
HN2 HN2
HA2 HA2
HB2 HB2
HB2A HB2A
HG2 HG2
HG2A HG2A
HD3 HD3
HD3A HD3A
HNE HNE
HNH1 HNH1
HNHA HNHA
HNH2 HNH2
H3 H3
H3A H3A