Atom Nomenclature for 0G6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0G6

Atom Name (V3) Atom Name (V2)
N N
CA CA
C C
O O
CB CB
CG CG
CD1 CD1
CD2 CD2
CE1 CE1
CE2 CE2
CZ CZ
N1 N1
CA1 CA1
C1 C1
O1 O1
CB1 CB1
CG1 CG1
CD CD
N2 N2
CA2 CA2
C2 C2
O2 O2
CB2 CB2
CG2 CG2
CD3 CD3
NE NE
CZ1 CZ1
NH1 NH1
NH2 NH2
C3 C3
CL CL
H H
H2 H2
HA HA
HB2 HB2
HB3 HB3
HD1 HD1
HD2 HD2
HE1 HE1
HE2 HE2
HZ HZ
HA1 HA1
HB21 HB21
HB31 HB31
HG2 HG2
HG3 HG3
HD21 HD21
HD3 HD3
H1 H1
HA2 HA2
HB22 HB22
HB32 HB32
HG21 HG21
HG31 HG31
HD22 HD22
HD31 HD31
HE HE
HH11 HH11
HH12 HH12
HH21 HH21
HH22 HH22
H11 H11
H21 H21
H33 H33
H34 H34