PDB Chemical Component 0G4
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0G4
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1B |
PB |
1.568 |
1.480 |
| O1G |
PG |
1.533 |
1.480 |
| N3B |
PB |
1.543 |
1.683 |
| N3B |
PG |
1.844 |
1.684 |
| PB |
O2B |
1.619 |
1.611 |
| PB |
O3A |
1.630 |
1.610 |
| O3G |
PG |
1.576 |
1.609 |
| PG |
O2C |
1.617 |
1.611 |
| O3A |
PA |
1.623 |
1.610 |
| PA |
O1A |
1.525 |
1.480 |
| PA |
O2A |
1.513 |
1.610 |
| PA |
O5' |
1.608 |
1.611 |
| F5 |
C5 |
1.330 |
1.351 |
| N4 |
C4 |
1.362 |
1.376 |
| O5' |
C5' |
1.431 |
1.429 |
| C5 |
C4 |
1.472 |
1.411 |
| C5 |
C6 |
1.390 |
1.355 |
| C5' |
C4' |
1.521 |
1.529 |
| C4 |
N3 |
1.326 |
1.326 |
| C6 |
N1 |
1.323 |
1.365 |
| O4' |
C4' |
1.416 |
1.449 |
| O4' |
C1' |
1.423 |
1.435 |
| N3 |
C2 |
1.333 |
1.332 |
| N1 |
C2 |
1.323 |
1.345 |
| N1 |
C1' |
1.453 |
1.465 |
| C4' |
S3' |
1.735 |
1.838 |
| C2 |
O2 |
1.240 |
1.221 |
| C1' |
C2' |
1.530 |
1.549 |
| S3' |
C2' |
1.748 |
1.837 |
| N4 |
H1 |
1.000 |
0.970 |
| N4 |
H2 |
1.000 |
0.970 |
| C6 |
H3 |
1.080 |
1.080 |
| C1' |
H4 |
1.100 |
1.089 |
| C2' |
H5 |
1.100 |
1.090 |
| C2' |
H6 |
1.100 |
1.090 |
| C4' |
H7 |
1.100 |
1.090 |
| C5' |
H8 |
1.099 |
1.090 |
| C5' |
H9 |
1.100 |
1.090 |
| O2A |
H10 |
0.950 |
0.967 |
| O2B |
H11 |
0.950 |
0.967 |
| N3B |
H12 |
1.000 |
1.009 |
| O3G |
H13 |
0.950 |
0.967 |
| O2C |
H14 |
0.950 |
0.966 |
Bond Angles for 0G4
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1G |
PG |
O2C |
114.2 |
109.4 |
| N3B |
PG |
O2C |
100.9 |
109.5 |
| PG |
N3B |
H12 |
108.8 |
111.0 |
| PB |
O2B |
H11 |
109.5 |
114.0 |
| O3G |
PG |
O2C |
124.1 |
109.5 |
| PG |
O2C |
H14 |
109.5 |
114.0 |
| O1A |
PA |
O2A |
121.0 |
109.5 |
| PA |
O2A |
H10 |
109.5 |
114.0 |
| F5 |
C5 |
C4 |
119.6 |
120.5 |
| F5 |
C5 |
C6 |
121.2 |
120.5 |
| N4 |
C4 |
N3 |
122.3 |
120.2 |
| O5' |
C5' |
H8 |
109.9 |
109.5 |
| O5' |
C5' |
H9 |
109.9 |
109.5 |
| C4 |
C5 |
C6 |
119.2 |
118.9 |
| C5 |
C4 |
N3 |
116.6 |
119.6 |
| C5 |
C6 |
N1 |
118.2 |
119.2 |
| C5 |
C6 |
H3 |
120.9 |
120.4 |
| C5' |
C4' |
H7 |
114.2 |
110.9 |
| C4 |
N3 |
C2 |
121.4 |
120.7 |
| C6 |
N1 |
C1' |
119.0 |
119.8 |
| N1 |
C6 |
H3 |
120.9 |
120.4 |
| O4' |
C4' |
S3' |
103.6 |
102.0 |
| O4' |
C4' |
H7 |
116.1 |
110.9 |
| O4' |
C1' |
C2' |
112.0 |
109.4 |
| O4' |
C1' |
H4 |
110.4 |
109.4 |
| N3 |
C2 |
O2 |
119.2 |
119.4 |
| N1 |
C1' |
C2' |
108.1 |
109.5 |
| N1 |
C1' |
H4 |
110.0 |
109.5 |
| C2' |
C1' |
H4 |
108.9 |
109.5 |
| C1' |
C2' |
H5 |
111.3 |
110.9 |
| C1' |
C2' |
H6 |
111.2 |
110.8 |
| S3' |
C2' |
H5 |
111.3 |
110.9 |
| S3' |
C2' |
H6 |
111.3 |
111.1 |
| H1 |
N4 |
H2 |
120.0 |
120.0 |
| H5 |
C2' |
H6 |
109.5 |
110.7 |
| H8 |
C5' |
H9 |
109.5 |
109.4 |
Torsion Angles for 0G4
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1B |
PB |
O2B |
H11 |
360.0 |
180.0 |
| N3B |
PG |
O1G |
O2C |
108.6 |
119.9 |
| O1G |
PG |
N3B |
H12 |
23.4 |
176.1 |
| O3G |
PG |
O1G |
O2C |
214.4 |
239.9 |
| O1G |
PG |
O2C |
H14 |
0.0 |
180.0 |
| N3B |
PB |
O2B |
H11 |
120.6 |
300.0 |
| O1G |
PG |
N3B |
O2C |
241.7 |
240.1 |
| O3G |
PG |
N3B |
O2C |
127.7 |
120.0 |
| N3B |
PG |
O2C |
H14 |
250.1 |
60.0 |
| O1G |
PG |
O3G |
O2C |
141.5 |
120.0 |
| N3B |
PG |
O3G |
O2C |
249.6 |
240.0 |
| O3G |
PG |
N3B |
H12 |
269.5 |
56.1 |
| O3G |
PG |
O2C |
H14 |
140.3 |
300.0 |
| O2C |
PG |
N3B |
H12 |
141.8 |
296.0 |
| O3A |
PA |
O2A |
H10 |
122.1 |
300.1 |
| O1A |
PA |
O2A |
H10 |
360.0 |
180.0 |
| PA |
O5' |
C5' |
H8 |
300.5 |
59.9 |
| PA |
O5' |
C5' |
H9 |
61.0 |
300.0 |
| C4 |
C5 |
F5 |
C6 |
180.6 |
180.2 |
| F5 |
C5 |
C4 |
N3 |
179.3 |
180.0 |
| F5 |
C5 |
C6 |
N1 |
180.4 |
179.8 |
| F5 |
C5 |
C6 |
H3 |
0.4 |
360.0 |
| N4 |
C4 |
C5 |
C6 |
181.0 |
180.2 |
| C5 |
C4 |
N4 |
N3 |
178.8 |
180.0 |
| N4 |
C4 |
N3 |
C2 |
179.5 |
179.9 |
| O5' |
C5' |
C4' |
H7 |
168.5 |
183.7 |
| H8 |
C5' |
O5' |
H9 |
239.5 |
120.0 |
| F5 |
C5 |
C4 |
C6 |
179.4 |
179.8 |
| N4 |
C4 |
C5 |
N3 |
181.1 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
359.8 |
359.6 |
| C4 |
C5 |
C6 |
H3 |
179.8 |
179.8 |
| C5 |
C4 |
N3 |
C2 |
0.6 |
359.9 |
| F5 |
C5 |
C6 |
C4 |
180.6 |
180.2 |
| C6 |
C5 |
C4 |
N3 |
359.9 |
0.3 |
| C5 |
C6 |
N1 |
C1' |
181.4 |
180.0 |
| N1 |
C6 |
C5 |
H3 |
180.0 |
179.8 |
| O4' |
C4' |
C5' |
H7 |
233.7 |
236.3 |
| N3 |
C4 |
C5 |
C6 |
359.9 |
0.3 |
| C4 |
N3 |
C2 |
O2 |
179.7 |
180.0 |
| C5 |
C6 |
N1 |
H3 |
180.0 |
180.2 |
| C6 |
N1 |
C1' |
C2' |
80.5 |
119.9 |
| C6 |
N1 |
C1' |
H4 |
199.3 |
240.0 |
| C5' |
C4' |
O4' |
H7 |
125.1 |
123.7 |
| C4' |
O4' |
C1' |
C2' |
27.8 |
49.7 |
| C4' |
O4' |
C1' |
H4 |
266.2 |
289.8 |
| N1 |
C1' |
O4' |
C2' |
118.5 |
120.0 |
| N1 |
C1' |
O4' |
H4 |
240.1 |
240.0 |
| C2' |
C1' |
O4' |
H4 |
121.6 |
120.0 |
| O4' |
C1' |
C2' |
H5 |
105.8 |
90.3 |
| O4' |
C1' |
C2' |
H6 |
228.2 |
213.7 |
| C5 |
C6 |
N1 |
C2 |
0.1 |
0.4 |
| C1' |
N1 |
C6 |
H3 |
1.4 |
359.8 |
| O4' |
C1' |
N1 |
C2' |
239.0 |
240.0 |
| O4' |
C1' |
N1 |
H4 |
120.2 |
120.0 |
| C2' |
C1' |
N1 |
H4 |
241.2 |
240.0 |
| N1 |
C1' |
C2' |
H5 |
347.7 |
330.3 |
| N1 |
C1' |
C2' |
H6 |
110.0 |
93.7 |
| O4' |
C4' |
S3' |
H7 |
125.3 |
118.1 |
| C4' |
S3' |
C2' |
H5 |
239.0 |
244.0 |
| C4' |
S3' |
C2' |
H6 |
116.6 |
120.4 |
| O4' |
C1' |
C2' |
H4 |
237.6 |
240.0 |
| N1 |
C1' |
C2' |
H4 |
119.5 |
120.0 |
| S3' |
C2' |
C1' |
H5 |
241.2 |
241.8 |
| S3' |
C2' |
C1' |
H6 |
118.8 |
118.4 |
| H5 |
C2' |
C1' |
H6 |
237.6 |
236.6 |
| O4' |
C4' |
S3' |
C2' |
16.2 |
22.7 |
| S3' |
C2' |
C1' |
H4 |
109.4 |
92.1 |
| C1' |
C2' |
S3' |
H5 |
118.8 |
118.2 |
| C1' |
C2' |
S3' |
H6 |
241.2 |
241.8 |
| H5 |
C2' |
S3' |
H6 |
122.4 |
123.6 |
| H1 |
N4 |
C4 |
N3 |
0.0 |
180.0 |
| H2 |
N4 |
C4 |
N3 |
180.0 |
360.0 |
| C5 |
C6 |
H3 |
N1 |
180.0 |
179.8 |
| H3 |
C6 |
N1 |
C1' |
1.4 |
359.8 |
| O4' |
C1' |
H4 |
C2' |
123.3 |
119.9 |
| N1 |
C1' |
H4 |
C2' |
241.7 |
240.0 |
| H4 |
C1' |
C2' |
H5 |
228.2 |
210.3 |
| H4 |
C1' |
C2' |
H6 |
350.6 |
333.7 |
| H5 |
C2' |
C1' |
H4 |
228.2 |
210.3 |
| C1' |
C2' |
H5 |
H6 |
123.4 |
123.5 |
| S3' |
C2' |
H5 |
H6 |
236.6 |
236.2 |
| H6 |
C2' |
C1' |
H4 |
350.6 |
333.7 |
| C1' |
C2' |
H6 |
H5 |
236.6 |
236.5 |
| S3' |
C2' |
H6 |
H5 |
123.4 |
123.6 |
| O4' |
C4' |
H7 |
S3' |
242.0 |
247.4 |
| O5' |
C5' |
H8 |
H9 |
120.8 |
240.0 |
| H8 |
C5' |
C4' |
H7 |
48.8 |
303.7 |
| O5' |
C5' |
H9 |
H8 |
239.2 |
120.0 |
| H9 |
C5' |
C4' |
H7 |
288.2 |
63.7 |
| H12 |
N3B |
PG |
O2C |
141.8 |
296.0 |
| H13 |
O3G |
PG |
O2C |
218.5 |
300.0 |